6DC3

RSV prefusion F bound to RSD5 Fab

6DC3 の概要

• エントリーDOI: 10.2210/pdb6dc3/pdb
• 分子名称: Fab RSD5-Germline Heavy Chain, Fab RSD5-Germline Light Chain, RSV fusion glycoprotein, ... (5 entities in total)
• 機能のキーワード: antibody, viral glycoprotein, complex, immune system
• 由来する生物種: Homo sapiens (Human); 詳細
• タンパク質・核酸の鎖数: 3
• 化学式量合計: 112183.13

構造登録者

Battles, M.B.,McLellan, J.S.,Jones, H.J. (登録日: 2018-05-04, 公開日: 2019-07-10, 最終更新日: 2024-11-13)

主引用文献

Jones, H.G.,Battles, M.B.,Lin, C.C.,Bianchi, S.,Corti, D.,McLellan, J.S.
Alternative conformations of a major antigenic site on RSV F.
Plos Pathog., 15:e1007944-e1007944, 2019

PubMed Abstract: The respiratory syncytial virus (RSV) fusion (F) glycoprotein is a major target of neutralizing antibodies arising from natural infection, and antibodies that specifically bind to the prefusion conformation of RSV F generally demonstrate the greatest neutralization potency. Prefusion-stabilized RSV F variants have been engineered as vaccine antigens, but crystal structures of these variants have revealed conformational differences in a key antigenic site located at the apex of the trimer, referred to as antigenic site Ø. Currently, it is unclear if flexibility in this region is an inherent property of prefusion RSV F or if it is related to inadequate stabilization of site Ø in the engineered variants. Therefore, we set out to investigate the conformational flexibility of antigenic site Ø, as well as the ability of the human immune system to recognize alternative conformations of this site, by determining crystal structures of prefusion RSV F bound to neutralizing human-derived antibodies AM22 and RSD5. Both antibodies bound with high affinity and were specific for the prefusion conformation of RSV F. Crystal structures of the complexes revealed that the antibodies recognized distinct conformations of antigenic site Ø, each diverging at a conserved proline residue located in the middle of an α-helix. These data suggest that antigenic site Ø exists as an ensemble of conformations, with individual antibodies recognizing discrete states. Collectively, these results have implications for the refolding of pneumovirus and paramyxovirus fusion proteins and should inform development of prefusion-stabilized RSV F vaccine candidates.

PubMed: 31306469
DOI: 10.1371/journal.ppat.1007944

実験手法

X-RAY DIFFRACTION (3.501 Å)