BbRAGL-3'TIR synaptic complex with nicked DNA refined with C2 symmetry

Summary for 6B40

EMDB information7078 7077 7046
DescriptorRAG1L,RAG1L, 31TIR intact strand, 31TIR pre-nicked strand of signal DNA, ... (7 entities in total)
Functional Keywordsdna transposase, dna cut and paste transposition, dde family rnase h fold dna transposase, recombination
Biological sourceBranchiostoma belcheri (Amphioxus)
Total number of polymer chains10
Total molecular weight304464.73
Zhang, Y.,Cheng, T.C.,Xiong, Y.,Schatz, D.G. (deposition date: 2017-09-25, release date: 2019-03-20, Last modification date: 2019-04-10)
Primary citation
Zhang, Y.,Cheng, T.C.,Surleac, M.D.,Petrescu, A.J.,Xu, A.,Xiong, Y.,Schatz, D.G.
Transposon Molecular Domestication and the Evolution of the RAG Recombinase
To Be Published,
Experimental method

Structure validation

ClashscoreRamachandran outliersSidechain outliers8 0.2% 0.1%MetricValuePercentile RanksWorseBetterPercentile relative to all structuresPercentile relative to all EM structures

More Asymmetric unit images

Molmil generated image of 6b40
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Molmil generated image of 6b40
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rotated about y axis by 90°