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6B40

BbRAGL-3'TIR synaptic complex with nicked DNA refined with C2 symmetry

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, F
(A, E)
RAG1L,RAG1Lpolymer65874440.12UniProt (A0A185KID9)
Pfam (PF12940)
Branchiostoma belcheri (Amphioxus)
2B, G
(B, F)
31TIR intact strandpolymer6219218.32Branchiostoma belcheri31TIR intact strand
3C, H
(C, G)
31TIR pre-nicked strand of signal DNApolymer4714357.22Branchiostoma belcheri31TIR pre-nicked strand of signal DNA
4D, I
(D, H)
31TIR pre-nicked strand of flanking DNApolymer154602.02Branchiostoma belcheri31TIR pre-nicked strand of flanking DNA
5E, J
(M, N)
RAG2Lpolymer36639509.32UniProt (A0A185KIE0)Branchiostoma belcheri (Amphioxus)
6K, M
(A, E)
CALCIUM IONnon-polymer40.12Chemie (CA)
7L, N
(A, E)
ZINC IONnon-polymer65.42Chemie (ZN)
Sequence modifications
A, E: 468 - 1106 (UniProt: A0A185KID9)
A, E: 1107 - 1125 (PDB: 6B40)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains10
Total formula weight304253.8
Non-Polymers*Number of molecules4
Total formula weight211.0
All*Total formula weight304464.7
*Water molecules are not included.

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PDB entries from 2026-01-14

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