Crystal structure of Arabidopsis thaliana AGDP1 AGD34

Summary for 5ZWZ

DescriptorAgenet domain-containing protein (2 entities in total)
Functional Keywordsagenet domain, agdp1, epigenetics, h3k9me2, gene regulation
Biological sourceArabidopsis thaliana (Mouse-ear cress)
Total number of polymer chains1
Total molecular weight19301.21
Du, X.,Du, J. (deposition date: 2018-05-17, release date: 2018-11-14)
Primary citation
Zhang, C.,Du, X.,Tang, K.,Yang, Z.,Pan, L.,Zhu, P.,Luo, J.,Jiang, Y.,Zhang, H.,Wan, H.,Wang, X.,Wu, F.,Tao, W.A.,He, X.J.,Zhang, H.,Bressan, R.A.,Du, J.,Zhu, J.K.
Arabidopsis AGDP1 links H3K9me2 to DNA methylation in heterochromatin
Nat Commun, 9:4547-4547, 2018
PubMed: 30382101 (PDB entries with the same primary citation)
DOI: 10.1038/s41467-018-06965-w
MImport into Mendeley
Experimental method

Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers 0.2192 0.7% 1.6% 5.6%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 5zwz
no rotation
Molmil generated image of 5zwz
rotated about x axis by 90°
Molmil generated image of 5zwz
rotated about y axis by 90°
PDBj@FacebookPDBj@TwitterwwPDBwwPDB Foundation

Copyright © 2013-2019 Protein Data Bank Japan