5YD3

Crystal structure of the scFv antibody 4B08 with epitope peptide

Summary for 5YD3

• Entry DOI: 10.2210/pdb5yd3/pdb
• Descriptor: scFv 4B08, Epitope peptide, SULFATE ION, ... (5 entities in total)
• Functional Keywords: antibody, biomolecular recognition, md simulations, thermodynamics, immune system
• Biological source: Mus musculus; More
• Total number of polymer chains: 8
• Total formula weight: 112451.66

Authors

Caaveiro, J.M.M.,Miyanabe, K.,Tsumoto, K. (deposition date: 2017-09-11, release date: 2018-06-06, Last modification date: 2023-11-22)

• Primary citation: Miyanabe, K.,Akiba, H.,Kuroda, D.,Nakakido, M.,Kusano-Arai, O.,Iwanari, H.,Hamakubo, T.,Caaveiro, J.M.M.,Tsumoto, K.; Intramolecular H-bonds govern the recognition of a flexible peptide by an antibody; J. Biochem., 164:65-76, 2018; PubMed: 29924367; DOI: 10.1093/jb/mvy032

Experimental method

X-RAY DIFFRACTION (1.35 Å)