5TEM

Structure of 4-Hydroxy-tetrahydrodipicolinate Reductase from Vibrio vulnificus with 2,6 Pyridine Dicarboxylic and NADH

5TEM の概要

• エントリーDOI: 10.2210/pdb5tem/pdb
• 関連するPDBエントリー: 5TEK 5TEN
• 分子名称: 4-hydroxy-tetrahydrodipicolinate reductase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, PYRIDINE-2,6-DICARBOXYLIC ACID, ... (5 entities in total)
• 機能のキーワード: oxidoreductase, lysine biosynthesis
• 由来する生物種: Vibrio vulnificus
• 細胞内の位置: Cytoplasm : Q8DEM0
• タンパク質・核酸の鎖数: 2
• 化学式量合計: 59388.72

構造登録者

Mank, N.,Arnette, K.,Klapper, V.,Chruszcz, M. (登録日: 2016-09-22, 公開日: 2017-10-18, 最終更新日: 2023-10-04)

主引用文献

Pote, S.,Kachhap, S.,Mank, N.J.,Daneshian, L.,Klapper, V.,Pye, S.,Arnette, A.K.,Shimizu, L.S.,Borowski, T.,Chruszcz, M.
Comparative structural and mechanistic studies of 4-hydroxy-tetrahydrodipicolinate reductases from Mycobacterium tuberculosis and Vibrio vulnificus.
Biochim Biophys Acta Gen Subj, 1865:129750-129750, 2021

PubMed Abstract: The products of the lysine biosynthesis pathway, meso-diaminopimelate and lysine, are essential for bacterial survival. This paper focuses on the structural and mechanistic characterization of 4-hydroxy-tetrahydrodipicolinate reductase (DapB), which is one of the enzymes from the lysine biosynthesis pathway. DapB catalyzes the conversion of (2S, 4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate (HTPA) to 2,3,4,5-tetrahydrodipicolinate in an NADH/NADPH dependent reaction. Genes coding for DapBs were identified as essential for many pathogenic bacteria, and therefore DapB is an interesting new target for the development of antibiotics.

PubMed: 32980502
DOI: 10.1016/j.bbagen.2020.129750

実験手法

X-RAY DIFFRACTION (2.2 Å)