PanDDA analysis group deposition -- Crystal structure of PTP1B in complex with compound_FMOPL000207a

Summary for 5QDP

Group depositionPanDDA analysis group deposition of models with modelled events (e.g. bound ligands) (G_1002043)
DescriptorTyrosine-protein phosphatase non-receptor type 1, N-ethyl-N'-(5-methyl-1,2-oxazol-3-yl)urea, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ... (4 entities in total)
Functional Keywordspandda, sgc - diamond i04-1 fragment screening, protein tyrosine phosphatase, ptp, protein tyrosine phosphatase 1b, ptp1b, enzyme, allostery, multiconformer, hydrolase
Biological sourceHomo sapiens (Human)
Total number of polymer chains1
Total molecular weight37583.45
Primary citation
Keedy, D.A.,Hill, Z.B.,Biel, J.T.,Kang, E.,Rettenmaier, T.J.,Brandao-Neto, J.,von Delft, F.,Wells, J.A.,Fraser, J.S.
Allosteric inhibition of a dynamic enzyme from multitemperature crystallography, fragment screening, and covalent tethering
To be published,
Experimental method

Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers 0.2158 0.4% 1.6% 5.0%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 5qdp
no rotation
Molmil generated image of 5qdp
rotated about x axis by 90°
Molmil generated image of 5qdp
rotated about y axis by 90°
PDBj@FacebookPDBj@TwitterwwPDBwwPDB Foundation

Copyright © 2013-2018 Protein Data Bank Japan