Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5OXP

PepTSt in occluded conformation with phosphate ion bound

Summary for 5OXP
Entry DOI10.2210/pdb5oxp/pdb
DescriptorDi-or tripeptide:H+ symporter, PHOSPHATE ION, PENTAETHYLENE GLYCOL, ... (6 entities in total)
Functional Keywordsalpha-helical membrane protein, membrane protein, mfs fold, peptide transporter, transport protein
Biological sourceStreptococcus thermophilus (strain ATCC BAA-250 / LMG 18311)
Cellular locationMembrane ; Multi-pass membrane protein : Q5M4H8
Total number of polymer chains1
Total formula weight59630.85
Authors
Martinez Molledo, M.,Quistgaard, E.M.,Loew, C. (deposition date: 2017-09-07, release date: 2018-02-21, Last modification date: 2024-01-17)
Primary citationMartinez Molledo, M.,Quistgaard, E.M.,Flayhan, A.,Pieprzyk, J.,Low, C.
Multispecific Substrate Recognition in a Proton-Dependent Oligopeptide Transporter.
Structure, 26:467-476.e4, 2018
Cited by
PubMed Abstract: Proton-dependent oligopeptide transporters (POTs) are important for uptake of dietary di- and tripeptides in many organisms, and in humans are also involved in drug absorption. These transporters accept a wide range of substrates, but the structural basis for how different peptide side chains are accommodated has so far remained obscure. Twenty-eight peptides were screened for binding to PepT from Streptococcus thermophilus, and structures were determined of PepT in complex with four physicochemically diverse dipeptides, which bind with millimolar affinity: Ala-Leu, Phe-Ala, Ala-Gln, and Asp-Glu. The structures show that PepT can adapt to different peptide side chains through movement of binding site residues and water molecules, and that a good fit can be further aided by adjustment of the position of the peptide itself. Finally, structures were also determined in complex with adventitiously bound HEPES, polyethylene glycol, and phosphate molecules, which further underline the adaptability of the binding site.
PubMed: 29429879
DOI: 10.1016/j.str.2018.01.005
PDB entries with the same primary citation
Experimental method
X-RAY DIFFRACTION (2.372 Å)
Structure validation

233605

PDB entries from 2025-03-26

PDB statisticsPDBj update infoContact PDBjnumon