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5OOE

Cryo-EM structure of F-actin in complex with AppNHp (AMPPNP)

Summary for 5OOE
Entry DOI10.2210/pdb5ooe/pdb
Related5ONV 5OOC 5OOD 5OOE 5OOF
EMDB information3835 3836 3837 3838 3838 3839
DescriptorActin, alpha skeletal muscle, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, MAGNESIUM ION (3 entities in total)
Functional Keywordscytoskeleton, nucleotide states, filament stability, cell migration, structural protein
Biological sourceOryctolagus cuniculus (Rabbit)
Total number of polymer chains5
Total formula weight212030.67
Authors
Merino, F.,Pospich, S.,Funk, J.,Kuellmer, F.,Arndt, H.-D.,Bieling, P.,Raunser, S. (deposition date: 2017-08-07, release date: 2018-06-13)
Primary citationMerino, F.,Pospich, S.,Funk, J.,Wagner, T.,Kullmer, F.,Arndt, H.D.,Bieling, P.,Raunser, S.
Structural transitions of F-actin upon ATP hydrolysis at near-atomic resolution revealed by cryo-EM.
Nat. Struct. Mol. Biol., 25:528-537, 2018
Cited by
PubMed Abstract: The function of actin is coupled to the nucleotide bound to its active site. ATP hydrolysis is activated during polymerization; a delay between hydrolysis and inorganic phosphate (P) release results in a gradient of ATP, ADP-P and ADP along actin filaments (F-actin). Actin-binding proteins can recognize F-actin's nucleotide state, using it as a local 'age' tag. The underlying mechanism is complex and poorly understood. Here we report six high-resolution cryo-EM structures of F-actin from rabbit skeletal muscle in different nucleotide states. The structures reveal that actin polymerization repositions the proposed catalytic base, His161, closer to the γ-phosphate. Nucleotide hydrolysis and P release modulate the conformational ensemble at the periphery of the filament, thus resulting in open and closed states, which can be sensed by coronin-1B. The drug-like toxin jasplakinolide locks F-actin in an open state. Our results demonstrate in detail how ATP hydrolysis links to F-actin's conformational dynamics and protein interaction.
PubMed: 29867215
DOI: 10.1038/s41594-018-0074-0
PDB entries with the same primary citation
Experimental method
ELECTRON MICROSCOPY (3.6 Å)
Structure validation

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