5NSK

apo Structure of Leucyl aminopeptidase from Trypanosoma brucei

Summary for 5NSK

• Entry DOI: 10.2210/pdb5nsk/pdb
• Descriptor: Aminopeptidase, putative (2 entities in total)
• Functional Keywords: m17 leucyl aminopeptidase, aminopeptidase, tryanosoma brucei, hydrolase
• Biological source: Trypanosoma brucei brucei TREU927
• Total number of polymer chains: 6
• Total formula weight: 332508.85

Authors

Timm, J.,Wilson, K.S. (deposition date: 2017-04-26, release date: 2017-08-02, Last modification date: 2024-01-17)

Primary citation

Timm, J.,Valente, M.,Garcia-Caballero, D.,Wilson, K.S.,Gonzalez-Pacanowska, D.
Structural Characterization of Acidic M17 Leucine Aminopeptidases from the TriTryps and Evaluation of Their Role in Nutrient Starvation inTrypanosoma brucei.
mSphere, 2:-, 2018

PubMed Abstract: Leucine aminopeptidase (LAP) is found in all kingdoms of life and catalyzes the metal-dependent hydrolysis of the N-terminal amino acid residue of peptide or amino acyl substrates. LAPs have been shown to participate in the N-terminal processing of certain proteins in mammalian cells and in homologous recombination and transcription regulation in bacteria, while in parasites, they are involved in host cell invasion and provision of essential amino acids for growth. The enzyme is essential for survival in , where its drug target potential has been suggested. We report here the X-ray structures of three kinetoplastid acidic LAPs (LAP-As from , , and ) which were solved in the metal-free and unliganded forms, as well as in a number of ligand complexes, providing insight into ligand binding, metal ion requirements, and oligomeric state. In addition, we analyzed mutant cells defective in LAP-A in , strongly suggesting that the enzyme is not required for the growth of this parasite either or . In procyclic cells, LAP-A was equally distributed throughout the cytoplasm, yet upon starvation, it relocalizes in particles that concentrate in the perinuclear region. Overexpression of the enzyme conferred a growth advantage when parasites were grown in leucine-deficient medium. Overall, the results suggest that in , LAP-A may participate in protein degradation associated with nutrient depletion. Leucine aminopeptidases (LAPs) catalyze the hydrolysis of the N-terminal amino acid of peptides and are considered potential drug targets. They are involved in multiple functions ranging from host cell invasion and provision of essential amino acids to site-specific homologous recombination and transcription regulation. In kinetoplastid parasites, there are at least three distinct LAPs. The availability of the crystal structures provides important information for drug design. Here we report the structure of the acidic LAPs from three kinetoplastids in complex with different inhibitors and explore their role in survival under various nutrient conditions. Importantly, the acidic LAP is dispensable for growth both and , an observation that questions its use as a specific drug target. While LAP-A is not essential, leucine depletion and subcellular localization studies performed under starvation conditions suggest a possible function of LAP-A in the response to nutrient restriction.

PubMed: 28815215
DOI: 10.1128/mSphere.00226-17

Experimental method

X-RAY DIFFRACTION (2.6 Å)