5MND

SFX structure of Cydia pomonella granulovirus using a double flow-focusing nozzle

Summary for 5MND

DescriptorGranulin (2 entities in total)
Functional Keywordssfx, granulovirus, in vivo crystals, nanocrystals, viral protein
Biological sourceCydia pomonella granulosis virus (isolate Mexico/1963)
Total number of polymer chains1
Total molecular weight28783.86
Authors
Oberthuer, D.,Chapman, H.,Doerner, K.,Xavier, P.L. (deposition date: 2016-12-13, release date: 2017-03-29, Last modification date: 2018-11-14)
Primary citation
Oberthuer, D.,Knoska, J.,Wiedorn, M.O.,Beyerlein, K.R.,Bushnell, D.A.,Kovaleva, E.G.,Heymann, M.,Gumprecht, L.,Kirian, R.A.,Barty, A.,Mariani, V.,Tolstikova, A.,Adriano, L.,Awel, S.,Barthelmess, M.,Dorner, K.,Xavier, P.L.,Yefanov, O.,James, D.R.,Nelson, G.,Wang, D.,Calvey, G.,Chen, Y.,Schmidt, A.,Szczepek, M.,Frielingsdorf, S.,Lenz, O.,Snell, E.,Robinson, P.J.,Sarler, B.,Belsak, G.,Macek, M.,Wilde, F.,Aquila, A.,Boutet, S.,Liang, M.,Hunter, M.S.,Scheerer, P.,Lipscomb, J.D.,Weierstall, U.,Kornberg, R.D.,Spence, J.C.,Pollack, L.,Chapman, H.N.,Bajt, S.
Double-flow focused liquid injector for efficient serial femtosecond crystallography.
Sci Rep, 7:44628-44628, 2017
PubMed: 28300169 (PDB entries with the same primary citation)
DOI: 10.1038/srep44628
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (2.56 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers 0.20620 3.6% 2.1%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 5mnd
no rotation
Molmil generated image of 5mnd
rotated about x axis by 90°
Molmil generated image of 5mnd
rotated about y axis by 90°

More Biological unit images

Molmil generated image of 5mnd
no rotation
Molmil generated image of 5mnd
rotated about x axis by 90°
Molmil generated image of 5mnd
rotated about y axis by 90°
(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (5mnd.pdb1.gz [949.17 KB])