Computationally Designed Thioredoxin dF106

Summary for 5J7D

DescriptorDesigned Thioredoxin dF106, COPPER (II) ION (3 entities in total)
Functional Keywordsthioredoxin, computational design, rosetta, oxidoreductase, de novo protein
Biological sourcesynthetic construct
Total number of polymer chains8
Total molecular weight104671.51
Horowitz, S.,Johansen, N.,Olsen, J.G.,Winther, J.R. (deposition date: 2016-04-06, release date: 2016-10-05, Last modification date: 2017-09-13)
Primary citation
Johansson, K.E.,Johansen, N.T.,Christensen, S.,Horowitz, S.,Bardwell, J.C.,Olsen, J.G.,Willemoes, M.,Lindorff-Larsen, K.,Ferkinghoff-Borg, J.,Hamelryck, T.,Winther, J.R.
Computational Redesign of Thioredoxin Is Hypersensitive toward Minor Conformational Changes in the Backbone Template.
J.Mol.Biol., 428:4361-4377, 2016
PubMed: 27659562 (PDB entries with the same primary citation)
DOI: 10.1016/j.jmb.2016.09.013
MImport into Mendeley
Experimental method

Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers 0.2768 0.5% 3.8% 1.8%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution
Download full validation reportDownload
PDB entries from 2020-10-21