D-aminoacyl-tRNA deacylase (DTD) from Plasmodium falciparum in complex with glycyl-3'-aminoadenosine at 2.10 Angstrom resolution

Summary for 5J61

DescriptorD-tyrosyl-tRNA(Tyr) deacylase, 3'-deoxy-3'-(glycylamino)adenosine (3 entities in total)
Functional Keywordsdtd, proofreading, chiral, enantioselection, hydrolase
Biological sourcePlasmodium falciparum (isolate 3D7)
Cellular locationCytoplasm  Q8IIS0
Total number of polymer chains8
Total molecular weight156451.14
Routh, S.B.,Ahmad, S.,Sankaranarayanan, R. (deposition date: 2016-04-04, release date: 2016-09-21)
Primary citation
Routh, S.B.,Pawar, K.I.,Ahmad, S.,Singh, S.,Suma, K.,Kumar, M.,Kuncha, S.K.,Yadav, K.,Kruparani, S.P.,Sankaranarayanan, R.
Elongation Factor Tu Prevents Misediting of Gly-tRNA(Gly) Caused by the Design Behind the Chiral Proofreading Site of D-Aminoacyl-tRNA Deacylase
Plos Biol., 14:e1002465-e1002465, 2016
PubMed: 27224426 (PDB entries with the same primary citation)
DOI: 10.1371/journal.pbio.1002465
MImport into Mendeley
Experimental method

Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.26930.1%4.3%9.3%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution
Download full validation report