5J3N

C-terminal domain of EcoR124I HsdR subunit fused with the pH-sensitive GFP variant ratiometric pHluorin

5J3N の概要

• エントリーDOI: 10.2210/pdb5j3n/pdb
• 分子名称: Green fluorescent protein,HsdR (2 entities in total)
• 機能のキーワード: hsdr, ecor124i, type i restriction-modification system, phluorin, gfp, fusion protein, hydrolase
• 由来する生物種: Aequorea victoria (Jellyfish); 詳細
• タンパク質・核酸の鎖数: 2
• 化学式量合計: 90982.56

構造登録者

Grinkevich, P.,Iermak, I.,Luedtke, N.,Mesters, J.R.,Ettrich, R.,Ludwig, J. (登録日: 2016-03-31, 公開日: 2017-04-12, 最終更新日: 2026-03-18)

主引用文献

Grinkevich, P.,Sinha, D.,Iermak, I.,Guzanova, A.,Weiserova, M.,Ludwig, J.,Mesters, J.R.,Ettrich, R.H.
Crystal structure of a novel domain of the motor subunit of the Type I restriction enzyme EcoR124 involved in complex assembly and DNA binding.
J. Biol. Chem., 293:15043-15054, 2018

PubMed Abstract: Although EcoR124 is one of the better-studied Type I restriction-modification enzymes, it still presents many challenges to detailed analyses because of its structural and functional complexity and missing structural information. In all available structures of its motor subunit HsdR, responsible for DNA translocation and cleavage, a large part of the HsdR C terminus remains unresolved. The crystal structure of the C terminus of HsdR, obtained with a crystallization chaperone in the form of pHluorin fusion and refined to 2.45 Å, revealed that this part of the protein forms an independent domain with its own hydrophobic core and displays a unique α-helical fold. The full-length HsdR model, based on the WT structure and the C-terminal domain determined here, disclosed a proposed DNA-binding groove lined by positively charged residues. and assays with a C-terminal deletion mutant of HsdR supported the idea that this domain is involved in complex assembly and DNA binding. Conserved residues identified through sequence analysis of the C-terminal domain may play a key role in protein-protein and protein-DNA interactions. We conclude that the motor subunit of EcoR124 comprises five structural and functional domains, with the fifth, the C-terminal domain, revealing a unique fold characterized by four conserved motifs in the IC subfamily of Type I restriction-modification systems. In summary, the structural and biochemical results reported here support a model in which the C-terminal domain of the motor subunit HsdR of the endonuclease EcoR124 is involved in complex assembly and DNA binding.

PubMed: 30054276
DOI: 10.1074/jbc.RA118.003978

実験手法

X-RAY DIFFRACTION (2.45 Å)