5DL8

Crystal structure of Acinetobacter baumannii OccAB4

Summary for 5DL8

• Entry DOI: 10.2210/pdb5dl8/pdb
• Descriptor: Benzoate transport porin BenP, (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, CALCIUM ION, ... (4 entities in total)
• Functional Keywords: outer membrane protein, beta-barrel, antibiotic uptake, acinetobacter baumannii, membrane protein
• Biological source: Acinetobacter baumannii AB307-0294
• Total number of polymer chains: 2
• Total formula weight: 96421.89

Authors

Zahn, M.,Basle, A.,van den Berg, B. (deposition date: 2015-09-04, release date: 2016-02-03, Last modification date: 2024-01-10)

Primary citation

Zahn, M.,Bhamidimarri, S.P.,Basle, A.,Winterhalter, M.,van den Berg, B.
Structural Insights into Outer Membrane Permeability of Acinetobacter baumannii.
Structure, 24:221-231, 2016

PubMed Abstract: Bacterial resistance against antibiotics is an increasing global health problem. In Gram-negative bacteria the low permeability of the outer membrane (OM) is a major factor contributing to resistance, making it important to understand channel-mediated small-molecule passage of the OM. Acinetobacter baumannii has five Occ (OM carboxylate channel) proteins, which collectively are of major importance for the entry of small molecules. To improve our understanding of the OM permeability of A. baumannii, we present here the X-ray crystal structures of four Occ proteins, renamed OccAB1 to OccAB4. In addition we have carried out a biochemical and biophysical characterization using electrophysiology and liposome swelling experiments, providing information on substrate specificities. We identify OccAB1 as having the largest pore of the Occ proteins with corresponding high rates of small-molecule uptake, and we suggest that the future design of efficient antibiotics should focus on scaffolds that can permeate efficiently through the OccAB1 channel.

PubMed: 26805524
DOI: 10.1016/j.str.2015.12.009

Experimental method

X-RAY DIFFRACTION (2.2 Å)