PepT - CIM

Summary for 5D6K

DescriptorDi-or tripeptide:H+ symporter, PHOSPHATE ION, (2R)-2,3-dihydroxypropyl (9Z)-hexadec-9-enoate, ... (5 entities in total)
Functional Keywordsalpha-helical, major facilitator superfamily (mfs) transporters, peptst oligopeptide-proton symporter (pot family), transport protein
Biological sourceStreptococcus thermophilus (strain ATCC BAA-250 / LMG 18311)
Cellular locationMembrane ; Multi-pass membrane protein  Q5M4H8
Total number of polymer chains1
Total molecular weight56161.99
Ma, P.,Caffrey, M. (deposition date: 2015-08-12, release date: 2016-08-17, Last modification date: 2017-08-30)
Primary citation
Ma, P.,Weichert, D.,Aleksandrov, L.A.,Jensen, T.J.,Riordan, J.R.,Liu, X.,Kobilka, B.K.,Caffrey, M.
The cubicon method for concentrating membrane proteins in the cubic mesophase.
Nat Protoc, 12:1745-1762, 2017
PubMed: 28771236 (PDB entries with the same primary citation)
DOI: 10.1038/nprot.2017.057
MImport into Mendeley
Experimental method

Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.244200.8%8.3%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution
Download full validation reportDownload
PDB entries from 2020-07-29