5BK9

AAD-1 Bound to the Vanadyl Ion and Succinate

Summary for 5BK9

Descriptor(R)-phenoxypropionate/alpha-ketoglutarate-dioxygenase, SUCCINIC ACID, oxovanadium(2+), ... (5 entities in total)
Functional Keywordsaryloxyalkanoate dioxygenase, herbicide degradation, biosynthetic protein, oxidoreductase
Biological sourceDelftia acidovorans (Pseudomonas acidovorans)
Total number of polymer chains2
Total molecular weight66947.07
Authors
Ongpipattanakul, C.,Chekan, J.R. (deposition date: 2019-06-01, release date: 2019-06-12)
Primary citation
Chekan, J.R.,Ongpipattanakul, C.,Wright, T.R.,Zhang, B.,Bollinger, J.M.,Rajakovich, L.J.,Krebs, C.,Cicchillo, R.M.,Nair, S.K.
Molecular basis for enantioselective herbicide degradation imparted by aryloxyalkanoate dioxygenases in transgenic plants
Proc. Natl. Acad. Sci. U.S.A., 2019
Experimental method
X-RAY DIFFRACTION (1.51 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers 0.2171 0.4% 1.1% 5.6%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

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More Biological unit images

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(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (5bk9.pdb1.gz [104.71 KB])