5B6X

A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained 760 ns after photoexcitation

Summary for 5B6X

Related5B6W 5B6V 5B6Y 5B6Z
DescriptorBacteriorhodopsin, RETINAL, 2,3-DI-PHYTANYL-GLYCEROL, ... (12 entities in total)
Functional Keywordsbacteriorhodopsin, xfel, time- resolved serial femtosecond crystallography, sacla, proton transport
Biological sourceHalobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
Cellular locationCell membrane ; Multi-pass membrane protein  P02945
Total number of polymer chains1
Total molecular weight30891.94
Authors
Royant, A.,Nango, E.,Nakane, T.,Tanaka, T.,Arima, T.,Neutze, R.,Iwata, S. (deposition date: 2016-06-02, release date: 2016-12-21, Last modification date: 2018-01-24)
Primary citation
Nango, E.,Royant, A.,Kubo, M.,Nakane, T.,Wickstrand, C.,Kimura, T.,Tanaka, T.,Tono, K.,Song, C.,Tanaka, R.,Arima, T.,Yamashita, A.,Kobayashi, J.,Hosaka, T.,Mizohata, E.,Nogly, P.,Sugahara, M.,Nam, D.,Nomura, T.,Shimamura, T.,Im, D.,Fujiwara, T.,Yamanaka, Y.,Jeon, B.,Nishizawa, T.,Oda, K.,Fukuda, M.,Andersson, R.,Bath, P.,Dods, R.,Davidsson, J.,Matsuoka, S.,Kawatake, S.,Murata, M.,Nureki, O.,Owada, S.,Kameshima, T.,Hatsui, T.,Joti, Y.,Schertler, G.,Yabashi, M.,Bondar, A.N.,Standfuss, J.,Neutze, R.,Iwata, S.
A three-dimensional movie of structural changes in bacteriorhodopsin
Science, 354:1552-1557, 2016
PubMed: 28008064 (PDB entries with the same primary citation)
DOI: 10.1126/science.aah3497
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (2.1 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.17530.4%016.5%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 5b6x
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Molmil generated image of 5b6x
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Molmil generated image of 5b6x
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More Biological unit images

Molmil generated image of 5b6x
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Molmil generated image of 5b6x
rotated about x axis by 90°
Molmil generated image of 5b6x
rotated about y axis by 90°
(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (5b6x.pdb1.gz [277.36 KB])
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