5AEW

Crystal structure of II9 variant of Biphenyl dioxygenase from Burkholderia xenovorans LB400 in complex with biphenyl

Summary for 5AEW

Related5AEU 5AEV
DescriptorBIPHENYL DIOXYGENASE SUBUNIT ALPHA, BIPHENYL DIOXYGENASE SUBUNIT BETA, FE2/S2 (INORGANIC) CLUSTER, ... (6 entities in total)
Functional Keywordsoxidoreductase, biphenyl dioxygenase, bphae-ii9, biphenyl, polychlorinated biphenyls
Biological sourceBURKHOLDERIA XENOVORANS LB400
Total number of polymer chains24
Total molecular weight887189.15
Authors
Dhindwal, S.,Gomez-Gil, L.,Sylvestre, M.,Eltis, L.D.,Bolin, J.T.,Kumar, P. (deposition date: 2015-01-10, release date: 2016-04-06, Last modification date: 2016-05-11)
Primary citation
Dhindwal, S.,Gomez-Gil, L.,Neau, D.B.,Pham, T.T.M.,Sylvestre, M.,Eltis, L.D.,Bolin, J.T.,Kumar, P.
Structural Basis of the Enhanced Pollutant-Degrading Capabilities of an Engineered Biphenyl Dioxygenase.
J.Bacteriol., 198:1499-, 2016
PubMed: 26953337 (PDB entries with the same primary citation)
DOI: 10.1128/JB.00952-15
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (1.88 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.26340.2%2.4%12.0%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

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More Biological unit images

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Molmil generated image of 5aew
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(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (5aew.pdb3.gz [635.09 KB])
Coordinate files for Biological unit (5aew.pdb2.gz [636.72 KB])
Coordinate files for Biological unit (5aew.pdb1.gz [657.87 KB])
Coordinate files for Biological unit (5aew.pdb4.gz [631.66 KB])
Coordinate files for Biological unit (5aew.pdb5.gz [629.96 KB])