4ZUW

Crystal structure of Equine MHC I(Eqca-N*00601) in complexed with equine infectious anaemia virus (EIAV) derived peptide Gag-GW12

Summary for 4ZUW

• Entry DOI: 10.2210/pdb4zuw/pdb
• Related: 4zus 4zut 4zuu 4zuv
• Descriptor: Classical MHC class I antigen, Beta-2-microglobulin, GLY-SER-GLN-LYS-LEU-THR-THR-GLY-ASN-CYS-ASN-TRP, ... (4 entities in total)
• Functional Keywords: lentivirus vaccine, immune system
• Biological source: Equus caballus (Horse); More
• Cellular location: Secreted: P01887
• Total number of polymer chains: 3
• Total formula weight: 44583.46

Authors

Yao, S.,Liu, J.,Qi, J.,Chen, R.,Zhang, N.,Liu, Y.,Xia, C. (deposition date: 2015-05-17, release date: 2016-04-06, Last modification date: 2024-10-30)

Primary citation

Yao, S.,Liu, J.,Qi, J.,Chen, R.,Zhang, N.,Liu, Y.,Wang, J.,Wu, Y.,Gao, G.F.,Xia, C.
Structural Illumination of Equine MHC Class I Molecules Highlights Unconventional Epitope Presentation Manner That Is Evolved in Equine Leukocyte Antigen Alleles
J Immunol., 196:1943-1954, 2016

PubMed Abstract: MHC class I (MHC I)-restricted virus-specific CTLs are implicated as critical components in the control of this naturally occurring lentivirus and in the protective immune response to the successfully applied attenuated equine infectious anemia virus vaccine in the horse. Nevertheless, the structural basis for how the equine MHC I presents epitope peptides remains unknown. In this study, we investigated the binding of several equine infectious anemia virus-derived epitope peptides by the ability to refold recombinant molecules and by thermal stability, and then by determining the x-ray structure of five peptide-MHC I complexes: equine MHC class I allele (Eqca)-N*00602/Env-RW12, Eqca-N*00602/Gag-GW12, Eqca-N*00602/Rev-QW11, Eqca-N*00602/Gag-CF9, and Eqca-N*00601/Gag-GW12. Although Eqca-N*00601 and Eqca-N*00602 differ by a single amino acid, Eqca-N*00601 exhibited a drastically different peptide presentation when binding a similar CTL epitope, Gag-GW12; the result makes the previously reported function clear to be non-cross-recognition between these two alleles. The structures plus Eqca-N*00602 complexed with a 9-mer peptide are particularly noteworthy in that we illuminated differences in apparent flexibility in the center of the epitope peptides for the complexes with Gag-GW12 as compared with Env-RW12, and a strict selection of epitope peptides with normal length. The featured preferences and unconventional presentations of long peptides by equine MHC I molecules provide structural bases to explain the exceptional anti-lentivirus immunity in the horse. We think that the beneficial reference points could serve as an initial platform for other human or animal lentiviruses.

PubMed: 26764037
DOI: 10.4049/jimmunol.1501352

Experimental method

X-RAY DIFFRACTION (2.6 Å)