4V6I

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

This is a large structure.

Summary for 4V6I

Related3IZ5 3IZ6 3IZ7 3IZ9 3IZD
Integrates3IZB 3IZS 3IZE 3IZF
EMDB information1669
Descriptor40S ribosomal protein RACK1 (RACK1), 40S ribosomal protein rpS0 (S2p), 40S ribosomal protein rpS3 (S3p), ... (83 entities in total)
Functional Keywordseukaryotic ribosome, homology modeling, de novo modeling, ribosomal proteins, novel ribosomal proteins, ribosome
Biological sourceSaccharomyces cerevisiae (yeast)
Cellular locationCytoplasm P38011 P32905 P05750 O13516 P25443 P26783 P0C0W1 P38701 P06367 P41057 P05756 P02407 Q01855 P07280 P0C0V8 Q3E792 P35997 Q3E7X9 P14126 P0C0W9 Q02326 P05738 P17076 P05317 P26784 P05748 P02406 Q02753 P05749 P05740 P04456 P04449 P05743 P0C2H6 P05747 P14120 P05737 P0C2H8 P38061 P87262 P05744 P05745 P49166 P49167 P04650 P05318 P05319 P26321 Q0JJA0 P41805
Ubiquitin: Cytoplasm . 60S ribosomal protein L40: Cytoplasm P0CH08
Total number of polymer chains86
Total molecular weight3104129.58
Authors
Primary citation
Armache, J.P.,Jarasch, A.,Anger, A.M.,Villa, E.,Becker, T.,Bhushan, S.,Jossinet, F.,Habeck, M.,Dindar, G.,Franckenberg, S.,Marquez, V.,Mielke, T.,Thomm, M.,Berninghausen, O.,Beatrix, B.,Soding, J.,Westhof, E.,Wilson, D.N.,Beckmann, R.
Cryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-A resolution.
Proc.Natl.Acad.Sci.USA, 107:19748-19753, 2010
PubMed: 20980660 (PDB entries with the same primary citation)
DOI: 10.1073/pnas.1009999107
MImport into Mendeley
Experimental method
ELECTRON MICROSCOPY
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Structure validation

ClashscoreRamachandran outliersSidechain outliersRNA backbone1910.9%11.6%0.41MetricValuePercentile RanksWorseBetterPercentile relative to all structuresPercentile relative to all EM structures

More Asymmetric unit images

Molmil generated image of 4v6i
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Molmil generated image of 4v6i
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Molmil generated image of 4v6i
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