4PEG

Dbr1 in complex with guanosine-5'-monophosphate

4PEG の概要

• エントリーDOI: 10.2210/pdb4peg/pdb
• 関連するPDBエントリー: 4PEF 4PEH 4PEI
• 分子名称: RNA lariat debranching enzyme, putative, MANGANESE (II) ION, GUANOSINE-5'-MONOPHOSPHATE, ... (6 entities in total)
• 機能のキーワード: nuclease, phosphodiesterase, metallohydrolase, metallophosphoesterase, lariat rna, hydrolase, metalloenzyme
• 由来する生物種: Entamoeba histolytica
• タンパク質・核酸の鎖数: 5
• 化学式量合計: 212325.32

構造登録者

Montemayor, E.J.,Katolik, A.,Clark, N.E.,Taylor, A.B.,Schuermann, J.P.,Combs, D.J.,Johnsson, R.,Holloway, S.P.,Stevens, S.W.,Damha, M.J.,Hart, P.J. (登録日: 2014-04-23, 公開日: 2014-08-27, 最終更新日: 2023-12-27)

主引用文献

Montemayor, E.J.,Katolik, A.,Clark, N.E.,Taylor, A.B.,Schuermann, J.P.,Combs, D.J.,Johnsson, R.,Holloway, S.P.,Stevens, S.W.,Damha, M.J.,Hart, P.J.
Structural basis of lariat RNA recognition by the intron debranching enzyme Dbr1.
Nucleic Acids Res., 42:10845-10855, 2014

PubMed Abstract: The enzymatic processing of cellular RNA molecules requires selective recognition of unique chemical and topological features. The unusual 2',5'-phosphodiester linkages in RNA lariats produced by the spliceosome must be hydrolyzed by the intron debranching enzyme (Dbr1) before they can be metabolized or processed into essential cellular factors, such as snoRNA and miRNA. Dbr1 is also involved in the propagation of retrotransposons and retroviruses, although the precise role played by the enzyme in these processes is poorly understood. Here, we report the first structures of Dbr1 alone and in complex with several synthetic RNA compounds that mimic the branchpoint in lariat RNA. The structures, together with functional data on Dbr1 variants, reveal the molecular basis for 2',5'-phosphodiester recognition and explain why the enzyme lacks activity toward 3',5'-phosphodiester linkages. The findings illuminate structure/function relationships in a unique enzyme that is central to eukaryotic RNA metabolism and set the stage for the rational design of inhibitors that may represent novel therapeutic agents to treat retroviral infections and neurodegenerative disease.

PubMed: 25123664
DOI: 10.1093/nar/gku725

実験手法

X-RAY DIFFRACTION (2 Å)