4MMC

Crystal structure of LeuBAT (delta6 mutant) in complex with desvenlafaxine

Summary for 4MMC

• Entry DOI: 10.2210/pdb4mmc/pdb
• Related: 4MM4 4MM5 4MM6 4MM7 4MM8 4MM9 4MMA 4MMB 4MMD 4MME 4MMF
• Descriptor: Transporter, SODIUM ION, 4-[(1R)-2-(dimethylamino)-1-(1-hydroxycyclohexyl)ethyl]phenol, ... (5 entities in total)
• Functional Keywords: transporter, transport protein
• Biological source: Aquifex aeolicus
• Total number of polymer chains: 1
• Total formula weight: 59225.86

Authors

Wang, H.,Gouaux, E. (deposition date: 2013-09-08, release date: 2013-10-16, Last modification date: 2024-02-28)

Primary citation

Wang, H.,Goehring, A.,Wang, K.H.,Penmatsa, A.,Ressler, R.,Gouaux, E.
Structural basis for action by diverse antidepressants on biogenic amine transporters.
Nature, 503:141-145, 2013

PubMed Abstract: The biogenic amine transporters (BATs) regulate endogenous neurotransmitter concentrations and are targets for a broad range of therapeutic agents including selective serotonin reuptake inhibitors (SSRIs), serotonin-noradrenaline reuptake inhibitors (SNRIs) and tricyclic antidepressants (TCAs). Because eukaryotic BATs are recalcitrant to crystallographic analysis, our understanding of the mechanism of these inhibitors and antidepressants is limited. LeuT is a bacterial homologue of BATs and has proven to be a valuable paradigm for understanding relationships between their structure and function. However, because only approximately 25% of the amino acid sequence of LeuT is in common with that of BATs, and as LeuT is a promiscuous amino acid transporter, it does not recapitulate the pharmacological properties of BATs. Indeed, SSRIs and TCAs bind in the extracellular vestibule of LeuT and act as non-competitive inhibitors of transport. By contrast, multiple studies demonstrate that both TCAs and SSRIs are competitive inhibitors for eukaryotic BATs and bind to the primary binding pocket. Here we engineered LeuT to harbour human BAT-like pharmacology by mutating key residues around the primary binding pocket. The final LeuBAT mutant binds the SSRI sertraline with a binding constant of 18 nM and displays high-affinity binding to a range of SSRIs, SNRIs and a TCA. We determined 12 crystal structures of LeuBAT in complex with four classes of antidepressants. The chemically diverse inhibitors have a remarkably similar mode of binding in which they straddle transmembrane helix (TM) 3, wedge between TM3/TM8 and TM1/TM6, and lock the transporter in a sodium- and chloride-bound outward-facing open conformation. Together, these studies define common and simple principles for the action of SSRIs, SNRIs and TCAs on BATs.

PubMed: 24121440
DOI: 10.1038/nature12648

Experimental method

X-RAY DIFFRACTION (2.3 Å)