4LIV

Structure of YcfD, a Ribosomal oxygenase from Escherichia coli in complex with Cobalt and succinic acid.

Summary for 4LIV

Entry DOI	10.2210/pdb4liv/pdb
Related	4LIT 4LIU
Descriptor	50S ribosomal protein L16 arginine hydroxylase, COBALT (II) ION, SUCCINIC ACID, ... (4 entities in total)
Functional Keywords	jmjc domain, dioxygenase, hydroxylation, oxidoreductase
Biological source	Escherichia coli
Total number of polymer chains	1
Total formula weight	46354.65
Authors	Brissett, N.C.,Doherty, A.J. (deposition date: 2013-07-03, release date: 2014-05-14, Last modification date: 2023-09-20)
Primary citation	Chowdhury, R.,Sekirnik, R.,Brissett, N.C.,Krojer, T.,Ho, C.H.,Ng, S.S.,Clifton, I.J.,Ge, W.,Kershaw, N.J.,Fox, G.C.,Muniz, J.R.,Vollmar, M.,Phillips, C.,Pilka, E.S.,Kavanagh, K.L.,von Delft, F.,Oppermann, U.,McDonough, M.A.,Doherty, A.J.,Schofield, C.J. Ribosomal oxygenases are structurally conserved from prokaryotes to humans. Nature, 509:422-426, 2014 Cited by PubMed: 24814345 DOI: 10.1038/nature13263 PDB entries with the same primary citation
Experimental method	X-RAY DIFFRACTION (2.7 Å)

Structure validation