4DX0

Structure of the 14-3-3/PMA2 complex stabilized by a pyrazole derivative

Summary for 4DX0

• Entry DOI: 10.2210/pdb4dx0/pdb
• Related: 3M50 3M51
• Descriptor: 14-3-3-like protein E, N.plumbaginifolia H+-translocating ATPase mRNA, 4-[(4R)-4-(4-nitrophenyl)-6-oxidanylidene-3-phenyl-1,4-dihydropyrrolo[3,4-c]pyrazol-5-yl]benzoic acid (3 entities in total)
• Functional Keywords: 14-3-3 fold, pyrrolidinones, protein binding-hydrolase complex, protein binding/hydrolase
• Biological source: Nicotiana tabacum (American tobacco,tobacco); More
• Total number of polymer chains: 2
• Total formula weight: 31522.58

Authors

Richter, A.,Rose, R.,Hedberg, C.,Waldmann, H.,Ottmann, C. (deposition date: 2012-02-27, release date: 2012-05-30, Last modification date: 2023-12-13)

Primary citation

Richter, A.,Rose, R.,Hedberg, C.,Waldmann, H.,Ottmann, C.
An Optimised Small-Molecule Stabiliser of the 14-3-3-PMA2 Protein-Protein Interaction.
Chemistry, 18:6520-6527, 2012

PubMed Abstract: Modulation of protein-protein interactions (PPIs) is a highly demanding, but also a very promising approach in chemical biology and targeted drug discovery. In contrast to inhibiting PPIs with small, chemically tractable molecules, stabilisation of these interactions can only be achieved with complex natural products, like rapamycin, FK506, taxol, forskolin, brefeldin and fusicoccin. Fusicoccin stabilises the activatory complex of the plant H(+)-ATPase PMA2 and 14-3-3 proteins. Recently, we have shown that the stabilising effect of fusicoccin could be mimicked by a trisubstituted pyrrolinone (pyrrolidone1, 1). Here, we report the synthesis, functional activity and crystal structure of derivatives of 1 that stabilise the 14-3-3-PMA2 complex. With a limited compound collection three modifications that are important for activity enhancement could be determined: 1) conversion of the pyrrolinone scaffold into a pyrazole, 2) introduction of a tetrazole moiety to the phenyl ring that contacts PMA2, and 3) addition of a bromine to the phenyl ring that exclusively contacts the 14-3-3 protein. The crystal structure of a pyrazole derivative of 1 in complex with 14-3-3 and PMA2 revealed that the more rigid core of this molecule positions the stabiliser deeper into the rim of the interface, enlarging especially the contact surface to PMA2. Combination of the aforementioned features gave rise to a molecule (37) that displays a threefold increase in stabilising the 14-3-3-PMA2 complex over 1. Compound 37 and the other active derivatives show no effect on two other important 14-3-3 protein-protein interactions, that is, with CRaf and p53. This is the first study that describes the successful optimisation of a PPI stabiliser identified by screening.

PubMed: 22467351
DOI: 10.1002/chem.201103761

Experimental method

X-RAY DIFFRACTION (3.4 Å)