4CP8

Structure of the amidase domain of allophanate hydrolase from Pseudomonas sp strain ADP

Summary for 4CP8

• Entry DOI: 10.2210/pdb4cp8/pdb
• Descriptor: ALLOPHANATE HYDROLASE, MALONATE ION (3 entities in total)
• Functional Keywords: hydrolase, atrazine breakdown pathway
• Biological source: PSEUDOMONAS SP.
• Total number of polymer chains: 6
• Total formula weight: 311978.85

Authors

Balotra, S.,Newman, J.,French, N.,French, L.,Peat, T.S.,Scott, C. (deposition date: 2014-02-03, release date: 2014-11-26, Last modification date: 2023-12-20)

Primary citation

Balotra, S.,Newman, J.,Cowieson, N.P.,French, N.G.,Campbell, P.M.,Briggs, L.J.,Warden, A.C.,Easton, C.J.,Peat, T.S.,Scott, C.
X-Ray Structure of the Amidase Domain of Atzf, the Allophanate Hydrolase from the Cyanuric Acid-Mineralizing Multienzyme Complex.
Appl.Environ.Microbiol., 81:470-, 2015

PubMed Abstract: The activity of the allophanate hydrolase from Pseudomonas sp. strain ADP, AtzF, provides the final hydrolytic step for the mineralization of s-triazines, such as atrazine and cyanuric acid. Indeed, the action of AtzF provides metabolic access to two of the three nitrogens in each triazine ring. The X-ray structure of the N-terminal amidase domain of AtzF reveals that it is highly homologous to allophanate hydrolases involved in a different catabolic process in other organisms (i.e., the mineralization of urea). The smaller C-terminal domain does not appear to have a physiologically relevant catalytic function, as reported for the allophanate hydrolase of Kluyveromyces lactis, when purified enzyme was tested in vitro. However, the C-terminal domain does have a function in coordinating the quaternary structure of AtzF. Interestingly, we also show that AtzF forms a large, ca. 660-kDa, multienzyme complex with AtzD and AtzE that is capable of mineralizing cyanuric acid. The function of this complex may be to channel substrates from one active site to the next, effectively protecting unstable metabolites, such as allophanate, from solvent-mediated decarboxylation to a dead-end metabolic product.

PubMed: 25362066
DOI: 10.1128/AEM.02783-14

Experimental method

X-RAY DIFFRACTION (2.5 Å)