45JF
Discovery of Ribosomally Synthesized and Post-translationally Modified Knottin from the Deep-Sea Sponge Stryphnus fortis
Summary for 45JF
| Entry DOI | 10.2210/pdb45jf/pdb |
| Descriptor | Stryphnine A (1 entity in total) |
| Functional Keywords | knottin, ribosomal protein |
| Biological source | Stryphnus fortis |
| Total number of polymer chains | 1 |
| Total formula weight | 3359.94 |
| Authors | Daly, N.L.,Gunasekera, S. (deposition date: 2026-08-31, release date: 2026-10-14, Last modification date: 2026-10-21) |
| Primary citation | Kosgahakumbura, L.N.,Slazak, B.,Daly, N.L.,Fadoul, R.,Mohamed, S.,Jacobsson, E.,Xiong, R.,Hellman, B.,Goransson, U.,Hettiarachchi, C.M.,Cardenas, P.,Gunasekera, S. Discovery of Ribosomally Synthesized and Post-translationally Modified Knottins from the Deep-Sea Sponge Stryphnus fortis . J.Nat.Prod., 89:2118-2132, 2026 Cited by PubMed Abstract: Knottins are stable, structurally constrained mini-proteins with diverse bioactivities. This work presents the first report of a novel family of knottins, 'stryphnines', from the deep-sea sponge Peptidomic and transcriptomic analysis revealed a rich peptide repertoire and confirmed their ribosomal and sponge origin. This led to the isolation of two novel knottins containing a side-chain to side-chain ester linkage between serine 10/11 and glutamic acid 29/30, respectively, alongside one of their counterpart peptides devoid of the ester bond. The cryptic ester linkage was difficult to resolve due to β-elimination occurring at the serine side-chain ester. However, a combination of NMR, pH incubation studies, and MS/MS analysis facilitated their complete identification. Both stryphnines with and without the ester linkage exhibited no cytotoxicity and genotoxicity to mammalian cells. In contrast, stryphnines with the ester linkage strongly inhibited biofouling by barnacle larvae and inhibited bacterial sialidase from . The core knottin framework remained extremely stable in human serum at physiological conditions, despite ester bond hydrolysis occurring at high temperature and different pH treatments. The positive attributes of nontoxicity and biological stability, alongside demonstrated bioactivities, open up opportunities to further investigate the true ecological role and biosynthetic mechanisms of stryphnines. PubMed: 42261690DOI: 10.1021/acs.jnatprod.6c00501 PDB entries with the same primary citation |
| Experimental method | SOLUTION NMR |
Structure validation
Download full validation report
