3ZTG

Solution structure of the RING finger-like domain of Retinoblastoma Binding Protein-6 (RBBP6)

Summary for 3ZTG

• Entry DOI: 10.2210/pdb3ztg/pdb
• Related: 2C7H 2Y8X
• NMR Information: BMRB: 17772
• Descriptor: E3 UBIQUITIN-PROTEIN LIGASE RBBP6, ZINC ION (2 entities in total)
• Functional Keywords: ligase, rbbp6, pact, u-box, mrna processing, mrna splicing
• Biological source: HOMO SAPIENS (HUMAN)
• Cellular location: Nucleus, nucleolus: Q7Z6E9
• Total number of polymer chains: 2
• Total formula weight: 20742.84

Authors

Kappo, M.A.,Ab, E.,Atkinson, R.A.,Faro, A.,Muleya, V.,Mulaudzi, T.,Poole, J.O.,McKenzie, J.M.,Pugh, D.J.R. (deposition date: 2011-07-07, release date: 2011-12-07, Last modification date: 2024-06-19)

Primary citation

Kappo, M.A.,Ab, E.,Hassem, F.,Atkinson, R.A.,Faro, A.,Muleya, V.,Mulaudzi, T.,Poole, J.O.,Mckenzie, J.M.,Chibi, M.,Moolman-Smook, J.C.,Rees, D.J.G.,Pugh, D.J.R.
Solution Structure of the Ring Finger-Like Domain of Retinoblastoma Binding Protein-6 (Rbbp6) Suggests It Functions as a U-Box
J.Biol.Chem., 287:7146-, 2012

PubMed Abstract: Retinoblastoma-binding protein-6 (RBBP6) plays a facilitating role, through its RING finger-like domain, in the ubiquitination of p53 by Hdm2 that is suggestive of E4-like activity. Although the presence of eight conserved cysteine residues makes it highly probable that the RING finger-like domain coordinates two zinc ions, analysis of the primary sequence suggests an alternative classification as a member of the U-box family, the members of which do not bind zinc ions. We show here that despite binding two zinc ions, the domain adopts a homodimeric structure highly similar to those of a number of U-boxes. Zinc ions could be replaced by cadmium ions without significantly disrupting the structure or the stability of the domain, although the rate of substitution was an order of magnitude slower than any previous measurement, suggesting that the structure is particularly stable, a conclusion supported by the high thermal stability of the domain. A hallmark of U-box-containing proteins is their association with chaperones, with which they cooperate in eliminating irretrievably unfolded proteins by tagging them for degradation by the proteasome. Using a yeast two-hybrid screen, we show that RBBP6 interacts with chaperones Hsp70 and Hsp40 through its N-terminal ubiquitin-like domain. Taken together with the structural similarities to U-box-containing proteins, our data suggest that RBBP6 plays a role in chaperone-mediated ubiquitination and possibly in protein quality control.

PubMed: 22130672
DOI: 10.1074/JBC.M110.217059

Experimental method

SOLUTION NMR