3ZBZ

Catalytic domain of mouse 2',3'-cyclic nucleotide 3'- phosphodiesterase, with mutation V321A, crystallized with 2'-AMPS

3ZBZ の概要

• エントリーDOI: 10.2210/pdb3zbz/pdb
• 関連するPDBエントリー: 2XMI 2Y1P 2Y3X 2YDB 2YDC 2YDD 2YOZ 2YP0 2YPC 2YPE 2YPH 2YQ9 3ZBR 3ZBS
• 分子名称: 2', 3'-CYCLIC-NUCLEOTIDE 3'-PHOSPHODIESTERASE, ACETIC ACID, 2'-O-(sulfidophosphinato)adenosine, ... (4 entities in total)
• 機能のキーワード: hydrolase, myelin, nervous system
• 由来する生物種: MUS MUSCULUS (HOUSE MOUSE)
• タンパク質・核酸の鎖数: 1
• 化学式量合計: 24689.21

構造登録者

Myllykoski, M.,Raasakka, A.,Lehtimaki, M.,Han, H.,Kursula, P. (登録日: 2012-11-14, 公開日: 2013-07-10, 最終更新日: 2023-12-20)

主引用文献

Myllykoski, M.,Raasakka, A.,Lehtimaki, M.,Han, H.,Kursula, I.,Kursula, P.
Crystallographic Analysis of the Reaction Cycle of 2',3'-Cyclic Nucleotide 3'-Phosphodiesterase, a Unique Member of the 2H Phosphoesterase Family
J.Mol.Biol., 425:4307-, 2013

PubMed Abstract: 2H phosphoesterases catalyze reactions on nucleotide substrates and contain two conserved histidine residues in the active site. Very limited information is currently available on the details of the active site and substrate/product binding during the catalytic cycle of these enzymes. We performed a comprehensive X-ray crystallographic study of mouse 2',3'-cyclic nucleotide 3'-phosphodiesterase (CNPase), a membrane-associated enzyme present at high levels in the tetrapod myelin sheath. We determined crystal structures of the CNPase phosphodiesterase domain complexed with substrate, product, and phosphorothioate analogues. The data provide detailed information on the CNPase reaction mechanism, including substrate binding mode and coordination of the nucleophilic water molecule. Linked to the reaction, an open/close motion of the β5-α7 loop is observed. The role of the N terminus of helix α7--unique for CNPase in the 2H family--during the reaction indicates that 2H phosphoesterases differ in their respective reaction mechanisms despite the conserved catalytic residues. Furthermore, based on small-angle X-ray scattering, we present a model for the full-length enzyme, indicating that the two domains of CNPase form an elongated molecule. Finally, based on our structural data and a comprehensive bioinformatics study, we discuss the conservation of CNPase in various organisms.

PubMed: 23831225
DOI: 10.1016/J.JMB.2013.06.012

実験手法

X-RAY DIFFRACTION (2.1 Å)