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3Q6G

Crystal structure of Fab of rhesus mAb 2.5B specific for quaternary neutralizing epitope of HIV-1 gp120

Summary for 3Q6G
Entry DOI10.2210/pdb3q6g/pdb
Related3Q6F
DescriptorLight chain of Fab of rhesus mAb 2.5B, Heavy chain of Fab of rhesus mAb 2.5B (3 entities in total)
Functional Keywordsig, neutralization of hiv-1 viruses, quaternary epitope of hiv-1 gp120, immune system
Biological sourceMacaca mulatta (Rhesus monkey)
More
Total number of polymer chains4
Total formula weight93921.52
Authors
Spurrier, B.,Sampson, J.,Totrov, M.,Li, H.,O'Neal, T.,William, C.,Robinson, J.,Gorny, M.K.,Zolla-Pazner, S.,Kong, X.P. (deposition date: 2010-12-31, release date: 2011-05-25, Last modification date: 2024-10-30)
Primary citationSpurrier, B.,Sampson, J.M.,Totrov, M.,Li, H.,O'Neal, T.,Williams, C.,Robinson, J.,Gorny, M.K.,Zolla-Pazner, S.,Kong, X.P.
Structural Analysis of Human and Macaque mAbs 2909 and 2.5B: Implications for the Configuration of the Quaternary Neutralizing Epitope of HIV-1 gp120.
Structure, 19:691-699, 2011
Cited by
PubMed Abstract: The quaternary neutralizing epitope (QNE) of HIV-1 gp120 is preferentially expressed on the trimeric envelope spikes of intact HIV virions, and QNE-specific monoclonal antibodies (mAbs) potently neutralize HIV-1. Here, we present the crystal structures of the Fabs of human mAb 2909 and macaque mAb 2.5B. Both mAbs have long beta hairpin CDR H3 regions >20 Å in length that are each situated at the center of their respective antigen-binding sites. Computational analysis showed that the paratopes include the whole CDR H3, while additional CDR residues form shallow binding pockets. Structural modeling suggests a way to understand the configuration of QNEs and the antigen-antibody interaction for QNE mAbs. Our data will be useful in designing immunogens that may elicit potent neutralizing QNE Abs.
PubMed: 21565703
DOI: 10.1016/j.str.2011.02.012
PDB entries with the same primary citation
Experimental method
X-RAY DIFFRACTION (1.902 Å)
Structure validation

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