3NQ1

Crystal Structure of Tyrosinase from Bacillus megaterium in complex with inhibitor kojic acid

Summary for 3NQ1

• Entry DOI: 10.2210/pdb3nq1/pdb
• Related: 3NM8 3NPY 3NQ0 3NQ5 3NTM
• Descriptor: Tyrosinase, COPPER (II) ION, ZINC ION, ... (5 entities in total)
• Functional Keywords: tyrosinase, type3 copper proteins, bacillus megaterium, oxidoreductase, kojic acid, oxidoreductase-oxidoreductase inhibitor complex, oxidoreductase/oxidoreductase inhibitor
• Biological source: Bacillus megaterium
• Total number of polymer chains: 2
• Total formula weight: 71957.72

Authors

Sendovski, M.,Kanteev, M.,Adir, N.,Fishman, A. (deposition date: 2010-06-29, release date: 2010-11-17, Last modification date: 2023-12-27)

Primary citation

Sendovski, M.,Kanteev, M.,Shuster Ben-Yosef, V.,Adir, N.,Fishman, A.
First structures of an active bacterial tyrosinase reveal copper plasticity.
J.Mol.Biol., 405:227-237, 2011

PubMed Abstract: Tyrosinase is a member of the type 3 copper enzyme family that is involved in the production of melanin in a wide range of organisms. The crystal structures of a tyrosinase from Bacillus megaterium were determined at a resolution of 2.0-2.3 Å. The enzyme crystallized as a dimer in the asymmetric unit and was shown to be active in crystal. The overall monomeric structure is similar to that of the monomer of the previously determined tyrosinase from Streptomyces castaneoglobisporus, but it does not contain an accessory Cu-binding "caddie" protein. Two Cu(II) ions, serving as the major cofactors within the active site, are coordinated by six conserved histidine residues. However, determination of structures under different conditions shows varying occupancies and positions of the copper ions. This apparent mobility in copper binding modes indicates that there is a pathway by which copper is accumulated or lost by the enzyme. Additionally, we suggest that residues R209 and V218, situated in a second shell of residues surrounding the active site, play a role in substrate binding orientation based on their flexibility and position. The determination of a structure with the inhibitor kojic acid, the first tyrosinase structure with a bound ligand, revealed additional residues involved in the positioning of substrates in the active site. Comparison of wild-type structures with the structure of the site-specific variant R209H, which possesses a higher monophenolase/diphenolase activity ratio, lends further support to a previously suggested mechanism by which monophenolic substrates dock mainly to CuA.

PubMed: 21040728
DOI: 10.1016/j.jmb.2010.10.048

Experimental method

X-RAY DIFFRACTION (2.3 Å)