3N7O

X-ray structure of human chymase in complex with small molecule inhibitor.

Summary for 3N7O

• Entry DOI: 10.2210/pdb3n7o/pdb
• Descriptor: Chymase, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, (S)-[(1S)-1-(5-chloro-1-benzothiophen-3-yl)-2-{[(E)-2-(3,4-difluorophenyl)ethenyl]amino}-2-oxoethyl]methylphosphinic acid, ... (5 entities in total)
• Functional Keywords: serine protease, hydrolase
• Biological source: Homo sapiens (human)
• Total number of polymer chains: 1
• Total formula weight: 26300.47

Authors

Abad, M.C.,Kervinen, J.,Crysler, C.,Bayoumy, S.,Spurlino, J.,Deckman, I.,Greco, M.N.,Maryanoff, B.E.,Degaravilla, L. (deposition date: 2010-05-27, release date: 2010-07-21, Last modification date: 2024-10-09)

Primary citation

Kervinen, J.,Crysler, C.,Bayoumy, S.,Abad, M.C.,Spurlino, J.,Deckman, I.,Greco, M.N.,Maryanoff, B.E.,de Garavilla, L.
Potency variation of small-molecule chymase inhibitors across species.
Biochem. Pharmacol., 80:1033-1041, 2010

PubMed Abstract: Chymases (EC 3.4.21.39) are mast cell serine proteinases that are variably expressed in different species and, in most cases, display either chymotryptic or elastolytic substrate specificity. Given that chymase inhibitors have emerged as potential therapeutic agents for treating various inflammatory, allergic, and cardiovascular disorders, it is important to understand interspecies differences of the enzymes as well as the behavior of inhibitors with them. We have expressed chymases from humans, macaques, dogs, sheep (MCP2 and MCP3), guinea pigs, and hamsters (HAM1 and HAM2) in baculovirus-infected insect cells. The enzymes were purified and characterized with kinetic constants by using chromogenic substrates. We evaluated in vitro the potency of five nonpeptide inhibitors, originally targeted against human chymase. The inhibitors exhibited remarkable cross-species variation of sensitivity, with the greatest potency observed against human and macaque chymases, with K(i) values ranging from approximately 0.4 to 72nM. Compounds were 10-300-fold less potent, and in some instances ineffective, against chymases from the other species. The X-ray structure of one of the potent phosphinate inhibitors, JNJ-18054478, complexed with human chymase was solved at 1.8A resolution to further understand the binding mode. Subtle variations in the residues in the active site that are already known to influence chymase substrate specificity can also strongly affect the compound potency. The results are discussed in the context of selecting a suitable animal model to study compounds ultimately targeted for human chymase.

PubMed: 20599788
DOI: 10.1016/j.bcp.2010.06.014

Experimental method

X-RAY DIFFRACTION (1.8 Å)