3LJF

The X-ray structure of iron superoxide dismutase from Pseudoalteromonas haloplanktis (crystal form II)

3LJF の概要

• エントリーDOI: 10.2210/pdb3ljf/pdb
• 関連するPDBエントリー: 3LIO 3Lj9
• 関連するBIRD辞書のPRD_ID: PRD_900006
• 分子名称: iron superoxide dismutase, alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose, FE (III) ION, ... (4 entities in total)
• 機能のキーワード: cold adaptation, superoxide dismutase, flexibility, thermal stability, psychrophilic protein, metal-binding, oxidoreductase
• 由来する生物種: Pseudoalteromonas haloplanktis
• タンパク質・核酸の鎖数: 4
• 化学式量合計: 86670.60

構造登録者

Merlino, A.,Russo Krauss, I.,Rossi, B.,Conte, M.,Vergara, A.,Sica, F. (登録日: 2010-01-26, 公開日: 2010-09-08, 最終更新日: 2023-09-06)

主引用文献

Merlino, A.,Russo Krauss, I.,Castellano, I.,De Vendittis, E.,Rossi, B.,Conte, M.,Vergara, A.,Sica, F.
Structure and flexibility in cold-adapted iron superoxide dismutases: the case of the enzyme isolated from Pseudoalteromonas haloplanktis.
J.Struct.Biol., 172:343-352, 2010

PubMed Abstract: Superoxide dismutases (SODs) are metalloenzymes catalysing the dismutation of superoxide anion radicals into molecular oxygen and hydrogen peroxide. Here, we present the crystal structure of a cold-adapted Fe-SOD from the Antarctic eubacterium Pseudoalteromonas haloplanktis (PhSOD), and that of its complex with sodium azide. The structures were compared with those of the corresponding homologues having a high sequence identity with PhSOD, such as the mesophilic SOD from Escherichia coli (EcSOD) or Pseudomonas ovalis, and the psychrophilic SOD from Aliivibrio salmonicida (AsSOD). These enzymes shared a large structural similarity, such as a conserved tertiary structure and arrangement of the two monomers, an almost identical total number of inter- and intramolecular hydrogen bonds and salt bridges. However, the two cold-adapted SODs showed an increased flexibility of the active site residues with respect to their mesophilic homologues. Structural information was combined with a characterisation of the chemical and thermal stability performed by CD and fluorescence measurements. Despite of its psychrophilic origin, the denaturation temperature of PhSOD was comparable with that of the mesophilic EcSOD, whereas AsSOD showed a lower denaturation temperature. On the contrary, the values of the denaturant concentration at the transition midpoint were in line with the psychrophilic/mesophilic origin of the proteins. These data provide additional support to the hypothesis that cold-adapted enzymes achieve efficient catalysis at low temperature, by increasing the flexibility of their active site; moreover, our results underline how fine structural modifications can alter enzyme flexibility and/or stability without compromising the overall structure of typical rigid enzymes, such as SODs.

PubMed: 20732427
DOI: 10.1016/j.jsb.2010.08.008

実験手法

X-RAY DIFFRACTION (2.1 Å)