3KM5

Crystal Structure Analysis of the K2 Cleaved Adhesin Domain of Lys-gingipain (Kgp)

Summary for 3KM5

DescriptorLysine specific cysteine protease, CALCIUM ION, SULFATE ION, ... (6 entities in total)
Functional Keywordsbeta jelly roll barrel, cleaved adhesin family, lys-gingipain, hemagglutination domain, cell invasion
Biological sourcePorphyromonas gingivalis
Total number of polymer chains2
Total molecular weight39246.78
Authors
Li, N.,Collyer, C.A.,Hunter, N. (deposition date: 2009-11-09, release date: 2010-03-31, Last modification date: 2017-11-01)
Primary citation
Li, N.,Yun, P.,Nadkarni, M.A.,Ghadikolaee, N.B.,Nguyen, K.-A.,Lee, M.,Hunter, N.,Collyer, C.A.
Structure determination and analysis of a haemolytic gingipain adhesin domain from Porphyromonas gingivalis
Mol.Microbiol., 76:861-873, 2010
PubMed: 20233299 (PDB entries with the same primary citation)
DOI: 10.1111/j.1365-2958.2010.07123.x
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (1.4 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.215101.9%6.0%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 3km5
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Molmil generated image of 3km5
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Molmil generated image of 3km5
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More Biological unit images

Molmil generated image of 3km5
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Molmil generated image of 3km5
rotated about x axis by 90°
Molmil generated image of 3km5
rotated about y axis by 90°
(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (3km5.pdb2.gz [32.11 KB])
Coordinate files for Biological unit (3km5.pdb1.gz [32.15 KB])