3IID
Crystal structure of the macro domain of human histone macroH2A1.1 in complex with ADP-ribose (form A)
Summary for 3IID
| Entry DOI | 10.2210/pdb3iid/pdb |
| Related | 1ZR3 2FXK 3IIF |
| Descriptor | Core histone macro-H2A.1, Isoform 1, ADENOSINE-5-DIPHOSPHORIBOSE, NITRATE ION, ... (4 entities in total) |
| Functional Keywords | histone, chromatin, macro domain, chromatin regulator, chromosomal protein, dna-binding, isopeptide bond, methylation, nucleosome core, nucleus, phosphoprotein, gene regulation |
| Biological source | Homo sapiens (human) |
| Cellular location | Nucleus: O75367-2 |
| Total number of polymer chains | 1 |
| Total formula weight | 22895.65 |
| Authors | Hothorn, M.,Bortfeld, M.,Ladurner, A.G.,Scheffzek, K. (deposition date: 2009-07-31, release date: 2009-08-18, Last modification date: 2023-09-06) |
| Primary citation | Timinszky, G.,Till, S.,Hassa, P.O.,Hothorn, M.,Kustatscher, G.,Nijmeijer, B.,Colombelli, J.,Altmeyer, M.,Stelzer, E.H.,Scheffzek, K.,Hottiger, M.O.,Ladurner, A.G. A macrodomain-containing histone rearranges chromatin upon sensing PARP1 activation. Nat.Struct.Mol.Biol., 16:923-929, 2009 Cited by PubMed Abstract: Poly-ADP-ribosylation is a post-translational modification catalyzed by PARP enzymes with roles in transcription and chromatin biology. Here we show that distinct macrodomains, including those of histone macroH2A1.1, are recruited to sites of PARP1 activation induced by laser-generated DNA damage. Chemical PARP1 inhibitors, PARP1 knockdown and mutation of ADP-ribose-binding residues in macroH2A1.1 abrogate macrodomain recruitment. Notably, histone macroH2A1.1 senses PARP1 activation, transiently compacts chromatin, reduces the recruitment of DNA damage factor Ku70-Ku80 and alters gamma-H2AX patterns, whereas the splice variant macroH2A1.2, which is deficient in poly-ADP-ribose binding, does not mediate chromatin rearrangements upon PARP1 activation. The structure of the macroH2A1.1 macrodomain in complex with ADP-ribose establishes a poly-ADP-ribose cap-binding function and reveals conformational changes in the macrodomain upon ligand binding. We thus identify macrodomains as modules that directly sense PARP activation in vivo and establish macroH2A histones as dynamic regulators of chromatin plasticity. PubMed: 19680243DOI: 10.1038/nsmb.1664 PDB entries with the same primary citation |
| Experimental method | X-RAY DIFFRACTION (1.9 Å) |
Structure validation
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