3I6X

Crystal structure of the calponin homology domain of IQGAP1

Summary for 3I6X

• Entry DOI: 10.2210/pdb3i6x/pdb
• Descriptor: Ras GTPase-activating-like protein IQGAP1 (2 entities in total)
• Functional Keywords: all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding, membrane protein
• Biological source: Homo sapiens (human)
• Cellular location: Cell membrane : P46940
• Total number of polymer chains: 4
• Total formula weight: 89549.76

Authors

Kurella, V.B. (deposition date: 2009-07-07, release date: 2010-07-21, Last modification date: 2023-09-06)

Primary citation

Liu, J.,Kurella, V.B.,LeCour Jr., L.,Vanagunas, T.,Worthylake, D.K.
The IQGAP1 N-Terminus Forms Dimers, and the Dimer Interface Is Required for Binding F-Actin and Calcium-Bound Calmodulin.
Biochemistry, 55:6433-6444, 2016

PubMed Abstract: IQGAP1 is a multidomain scaffold protein involved in many cellular processes. We have determined the crystal structure of an N-terminal fragment spanning residues 1-191 (CHDF hereafter) that contains the entire calponin homology domain. The structure of the CHDF is very similar to those of other type 3 calponin homology domains like those from calponin, Vav, and the yeast IQGAP1 ortholog Rng2. However, in the crystal, two CHDF molecules form a "head-to-head" or parallel dimer through mostly hydrophobic interactions. Binding experiments indicate that the CHDF binds to both F-actin and Ca/calmodulin, but binding is mutually exclusive. On the basis of the structure, two dimer interface substitutions were introduced. While CHDFL157D disrupts the dimer in gel filtration experiments, oxidized CHDFK161C stabilizes the dimer. These results imply that the CHDF forms the same dimer in solution that is seen in the crystal structure. The disulfide-stabilized dimer displays a reduced level of F-actin binding in sedimentation assays and shows no binding to Ca/calmodulin in isothermal titration calorimetry (ITC) experiments, indicating that interface residues are utilized for both binding events. The Calmodulin Target Database predicts that residues KK are important for CaM binding, and indeed, the EE double mutation displays a reduced level of binding to Ca/calmodulin in ITC experiments. Our results indicate that the CHDF dimer interface is used for both F-actin and Ca/calmodulin binding, and the KK pair, near the interface, is also used for Ca/calmodulin binding. These results are also consistent with full-length IQGAP1 forming a parallel homodimer.

PubMed: 27798963
DOI: 10.1021/acs.biochem.6b00745

Experimental method

X-RAY DIFFRACTION (2.5 Å)