3EDB

Carbonmonoxy Sperm Whale Myoglobin at 120 K: Laser on [150 min]

Summary for 3EDB

Related3E5I 3ECZ
DescriptorMyoglobin, PROTOPORPHYRIN IX CONTAINING FE, CARBON MONOXIDE, ... (5 entities in total)
Functional Keywordshaem protein, myoglobin, ligand migration, photodissociation, heme, iron, metal-binding, muscle protein, oxygen transport, transport
Biological sourcePhyseter catodon (Sperm whale)
Total number of polymer chains1
Total molecular weight18071.57
Authors
Tomita, A.,Sato, T.,Ichiyanagi, K.,Nozawa, S.,Ichikawa, H.,Chollet, M.,Kawai, F.,Park, S.-Y.,Koshihara, S.,Adachi, S. (deposition date: 2008-09-03, release date: 2009-02-24, Last modification date: 2017-10-25)
Primary citation
Tomita, A.,Sato, T.,Ichiyanagi, K.,Nozawa, S.,Ichikawa, H.,Chollet, M.,Kawai, F.,Park, S.-Y.,Tsuduki, T.,Yamato, T.,Koshihara, S.,Adachi, S.
Visualizing breathing motion of internal cavities in concert with ligand migration in myoglobin
Proc.Natl.Acad.Sci.USA, 106:2612-2616, 2009
PubMed: 19204297 (PDB entries with the same primary citation)
DOI: 10.1073/pnas.0807774106
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (1.21 Å)
NMR Information
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.178201.6%2.6%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution