MHC CLASS I H-2Dd Heavy chain complexed with Beta-2 Microglobulin and a variant peptide, PA9, from the Human immunodeficiency virus (BaL) envelope glycoprotein 120

Summary for 3E6F

Related1DDH 3E6H
DescriptorH-2 class I histocompatibility antigen, D-D alpha chain, BETA-2 MICROGLOBULIN, Envelope glycoprotein 9-residue peptide, ... (4 entities in total)
Functional Keywordscomplex (histocompatibility-antigen), glycoprotein, immune response, membrane, mhc i, phosphoprotein, transmembrane, immunoglobulin domain, secreted, envelope protein, immune system
Biological sourceMus musculus (mouse)
Cellular locationMembrane; Single-pass type I membrane protein P01900
Total number of polymer chains3
Total molecular weight44581.03
Wang, R.,Natarajan, K.,Robinson, H.,Margulies, D.H. (deposition date: 2008-08-15, release date: 2009-08-18, Last modification date: 2017-10-25)
Primary citation
Honda, M.,Wang, R.,Kong, W.P.,Kanekiyo, M.,Akahata, W.,Xu, L.,Matsuo, K.,Natarajan, K.,Robinson, H.,Asher, T.E.,Price, D.A.,Douek, D.C.,Margulies, D.H.,Nabel, G.J.
Different vaccine vectors delivering the same antigen elicit CD8+ T cell responses with distinct clonotype and epitope specificity
J.Immunol., 183:2425-2434, 2009
PubMed: 19620307 (PDB entries with the same primary citation)
DOI: 10.4049/jimmunol.0900581
MImport into Mendeley
Experimental method

Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers 0.23115 0.5% 9.5% 1.6%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution
Download full validation reportDownload
PDB entries from 2020-10-21