3DKD

Crystal structure of the mimivirus NDK +Kpn-N62L-R107G triple mutant complexed with GDP

Summary for 3DKD

Related2B8P
DescriptorNucleoside diphosphate kinase, MAGNESIUM ION, GUANOSINE-5'-DIPHOSPHATE, ... (4 entities in total)
Functional Keywordsndk phosphotransferase nucleotide binding, atp-binding, kinase, magnesium, metal-binding, nucleotide metabolism, nucleotide-binding, phosphoprotein, transferase
Biological sourceAcanthamoeba polyphaga mimivirus (APMV)
Total number of polymer chains2
Total molecular weight33990.42
Authors
Jeudy, S.,Lartigue, A.,Claverie, J.M.,Abergel, C. (deposition date: 2008-06-24, release date: 2009-08-25, Last modification date: 2011-07-13)
Primary citation
Jeudy, S.,Lartigue, A.,Claverie, J.M.,Abergel, C.
Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase.
J.Virol., 83:7142-7150, 2009
PubMed: 19439473 (PDB entries with the same primary citation)
DOI: 10.1128/JVI.00511-09
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (1.9 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.213401.3%0MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution
Download full validation report