3BD7

Glycogen Phosphorylase complex with 1(-D-glucopyranosyl) thymine

Summary for 3BD7

Related3BCR 3BCS 3BCU 3BD6 3BD8 3BDA
DescriptorGlycogen phosphorylase, muscle form, PYRIDOXAL-5'-PHOSPHATE, 1-beta-D-glucopyranosyl-5-methylpyrimidine-2,4(1H,3H)-dione, ... (4 entities in total)
Functional Keywordsglycogenolysis, type 2 diabetes, allosteric enzyme, carbohydrate metabolism, glycogen metabolism, glycosyltransferase, nucleotide-binding, phosphoprotein, pyridoxal phosphate, transferase
Biological sourceOryctolagus cuniculus (Rabbit)
Total number of polymer chains1
Total molecular weight98114.85
Authors
Sovantzis, D.A.,Hadjiloi, T.,Hayes, J.M.,Zographos, S.E.,Chrysina, E.D.,Oikonomakos, N.G. (deposition date: 2007-11-14, release date: 2008-11-18, Last modification date: 2020-07-29)
Primary citation
Cisma, C.,Sovantzis, D.A.,Hadjiloi, T.,Stathis, D.,Gimisis, T.,Hayes, J.M.,Zographos, S.E.,Leonidas, D.D.,Chrysina, E.D.,Oikonomakos, N.G.
D-Glucopyranosyl pyrimidine nucleoside binding to muscle glycogen phosphorylase b
To be Published,
Experimental method
X-RAY DIFFRACTION (1.9 Å)
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Structure validation

ClashscoreRamachandran outliersSidechain outliersRSRZ outliers60 4.7% 6.5%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution
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PDB entries from 2020-08-05