3QKP

Protein Tyrosine Phosphatase 1B - Apo W179F mutant with open WPD-loop

Summary for 3QKP

• Entry DOI: 10.2210/pdb3qkp/pdb
• Related: 2CM2 3F99 3QKN 3QKO 3QKQ
• Descriptor: Tyrosine-protein phosphatase non-receptor type 1, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, GLYCEROL, ... (4 entities in total)
• Functional Keywords: hydrolase, p-loop, wpd-loop, protein phosphatase, egfr receptor, phosphoprotein
• Biological source: Homo sapiens (human)
• Cellular location: Endoplasmic reticulum membrane ; Peripheral membrane protein ; Cytoplasmic side : P18031
• Total number of polymer chains: 1
• Total formula weight: 37632.94

Authors

Brandao, T.A.S.,Johnson, S.J.,Hengge, A.C. (deposition date: 2011-02-01, release date: 2012-08-08, Last modification date: 2023-09-13)

Primary citation

Brandao, T.A.,Johnson, S.J.,Hengge, A.C.
The molecular details of WPD-loop movement differ in the protein-tyrosine phosphatases YopH and PTP1B.
Arch.Biochem.Biophys., 525:53-59, 2012

PubMed Abstract: The movement of a conserved protein loop (the WPD-loop) is important in catalysis by protein tyrosine phosphatases (PTPs). Using kinetics, isotope effects, and X-ray crystallography, the different effects arising from mutation of the conserved tryptophan in the WPD-loop were compared in two PTPs, the human PTP1B, and the bacterial YopH from Yersinia. Mutation of the conserved tryptophan in the WPD-loop to phenylalanine has a negligible effect on k(cat) in PTP1B and full loop movement is maintained. In contrast, the corresponding mutation in YopH reduces k(cat) by two orders of magnitude and the WPD loop locks in an intermediate position, disabling general acid catalysis. During loop movement the indole moiety of the WPD-loop tryptophan moves in opposite directions in the two enzymes. Comparisons of mammalian and bacterial PTPs reveal differences in the residues forming the hydrophobic pocket surrounding the conserved tryptophan. Thus, although WPD-loop movement is a conserved feature in PTPs, differences exist in the molecular details, and in the tolerance to mutation, in PTP1B compared to YopH. Despite high structural similarity of the active sites in both WPD-loop open and closed conformations, differences are identified in the molecular details associated with loop movement in PTPs from different organisms.

PubMed: 22698963
DOI: 10.1016/j.abb.2012.06.002

Experimental method

X-RAY DIFFRACTION (2.05 Å)