36IU

Cryo-EM structure of BRD4 BD1 with basic patch 1 bound to acetylated nucleosomes

Summary for 36IU

• Entry DOI: 10.2210/pdb36iu/pdb
• EMDB information: 77605
• Descriptor: Histone H3, Histone H4, Histone H2A type 1-B/E, ... (7 entities in total)
• Functional Keywords: chromatin reader brd4 acetylated nucleosome, nuclear protein, nuclear protein-dna complex, nuclear protein/dna
• Biological source: Xenopus laevis (African clawed frog); More
• Total number of polymer chains: 11
• Total formula weight: 291551.46

Authors

Zhu, J.,Leith, E.M.,O'Donnell, E.N.,Manzano, B.P.,Wu, S.-Y.,Chiang, C.-M.,Armache, J.-P.,Tan, S. (deposition date: 2026-06-12, release date: 2026-08-12, Last modification date: 2026-09-02)

Primary citation

Zhu, J.,Leith, E.M.,O'Donnell, E.N.,Manzano, B.P.,Wu, S.Y.,Chiang, C.M.,Armache, J.P.,Tan, S.
BRD4 binds the nucleosome via both histone and DNA interactions.
Mol.Cell, 86:3185-3197.e7, 2026

PubMed Abstract: BRD4, a bromodomain and extraterminal (BET) family transcriptional regulator, is believed to be recruited to chromatin via interactions between its tandem bromodomains (BD1 and BD2) and acetylated histone tails. Although extensive studies have explained how individual BRD4 bromodomains bind to acetylated peptides and how BET inhibitors interfere with such interactions, equivalent studies of the full-length BRD4 protein with the nucleosome have been lacking. Our cryo-electron microscopy (cryo-EM) structure of the BRD4 short (BRD4-S) isoform bound to a nucleosome diacetylated on histone H4 shows how BRD4 BD1 engages both the H4 tail and nucleosomal DNA. Unlike other chromatin reader domain/nucleosome structures, BRD4 BD1 presents the acetylated histone tail for potential interactions with additional chromatin proteins. Unexpectedly, our biochemical studies indicate that BRD4 uses basic regions outside of the bromodomains to bind nucleosomes tightly even in the absence of histone acetylation. Our results further show that histone H4 acetylation influences the conformation of the BRD4/nucleosome complex.

PubMed: 42561958
DOI: 10.1016/j.molcel.2026.07.012

Experimental method

ELECTRON MICROSCOPY (3.69 Å)