2Y4M

MANNOSYLGLYCERATE SYNTHASE IN COMPLEX WITH GDP-Mannose

Replaces:  2XW5

Summary for 2Y4M

Related2Y4L 2Y4J 2Y4K
DescriptorMANNOSYLGLYCERATE SYNTHASE, MAGNESIUM ION, GUANOSINE 5'-(TRIHYDROGEN DIPHOSPHATE), P'-D-MANNOPYRANOSYL ESTER, ... (6 entities in total)
Functional Keywordstransferase, glycosyltransferase, gt family 78 mannosyl-3-phosphoglycerate synthase, gdp-mannose
Biological sourceRHODOTHERMUS MARINUS
Total number of polymer chains2
Total molecular weight91118.15
Authors
Nielsen, M.M.,Suits, M.D.L.,Yang, M.,Barry, C.S.,Martinez-Fleites, C.,Tailford, L.E.,Flint, J.E.,Davis, B.G.,Davies, G.J.,Gilbert, H.J. (deposition date: 2011-01-07, release date: 2011-02-02, Last modification date: 2012-08-29)
Primary citation
Nielsen, M.M.,Suits, M.D.L.,Yang, M.,Barry, C.S.,Martinez-Fleites, C.,Tailford, L.E.,Flint, J.E.,Dumon, C.,Davis, B.G.,Gilbert, H.J.,Davies, G.J.
Substrate and Metal Ion Promiscuity in Mannosylglycerate Synthase.
J.Biol.Chem., 286:15155-, 2011
PubMed: 21288903 (PDB entries with the same primary citation)
DOI: 10.1074/JBC.M110.199844
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (2.7 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.21370.4%6.0%2.1%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 2y4m
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Molmil generated image of 2y4m
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Molmil generated image of 2y4m
rotated about y axis by 90°

More Biological unit images

Molmil generated image of 2y4m
no rotation
Molmil generated image of 2y4m
rotated about x axis by 90°
Molmil generated image of 2y4m
rotated about y axis by 90°
(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (2y4m.pdb1.gz [68.25 KB])
Coordinate files for Biological unit (2y4m.pdb2.gz [68.15 KB])