2WMG

Crystal structure of the catalytic module of a family 98 glycoside hydrolase from Streptococcus pneumoniae TIGR4 (Sp4GH98) in complex with the LewisY pentasaccharide blood group antigen.

Summary for 2WMG

Related2J1U 2J22 2J1S 2J1V 2J1T 2J1R 2WMF 2WMH
Related PRD IDPRD_900054
DescriptorFUCOLECTIN-RELATED PROTEIN, alpha-L-fucopyranose-(1-2)-beta-D-galactopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose (3 entities in total)
Functional Keywordshydrolase, glycoside hydrolase, streptococcus pneumoniae, lewisy blood group antigen, fucose utilization
Biological sourceSTREPTOCOCCUS PNEUMONIAE
Total number of polymer chains1
Total molecular weight67445.39
Authors
Higgins, M.A.,Whitworth, G.E.,El Warry, N.,Randriantsoa, M.,Samain, E.,Burke, R.D.,Vocadlo, D.J.,Boraston, A.B. (deposition date: 2009-06-30, release date: 2009-07-14, Last modification date: 2020-07-29)
Primary citation
Higgins, M.A.,Whitworth, G.E.,El Warry, N.,Randriantsoa, M.,Samain, E.,Burke, R.D.,Vocadlo, D.J.,Boraston, A.B.
Differential Recognition and Hydrolysis of Host Carbohydrate-Antigens by Streptococcus Pneumoniae Family 98 Glycoside Hydrolases.
J.Biol.Chem., 284:26161-, 2009
PubMed: 19608744 (PDB entries with the same primary citation)
DOI: 10.1074/JBC.M109.024067
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (2.3 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers 0.2264 0.4% 2.2% 0.5%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution
Download full validation reportDownload
170172
PDB entries from 2020-10-21