2VSN

Structure and topological arrangement of an O-GlcNAc transferase homolog: insight into molecular control of intracellular glycosylation

Summary for 2VSN

DescriptorXCOGT, URIDINE-5'-DIPHOSPHATE (3 entities in total)
Functional Keywordsglycosyl transferase, n- acetylglucosamine, tpr, ogt, glcnac, o-glycosylation, transferase
Biological sourceXANTHOMONAS CAMPESTRIS PV. CAMPESTRIS
Total number of polymer chains2
Total molecular weight123485.46
Authors
Martinez-Fleites, C.,Macauley, M.S.,He, Y.,Shen, D.,Vocadlo, D.,Davies, G.J. (deposition date: 2008-04-28, release date: 2008-06-10, Last modification date: 2011-07-13)
Primary citation
Martinez-Fleites, C.,Macauley, M.S.,He, Y.,Shen, D.L.,Vocadlo, D.J.,Davies, G.J.
Structure of an O-Glcnac Transferase Homolog Provides Insight Into Intracellular Glycosylation.
Nat.Struct.Mol.Biol., 15:764-, 2008
PubMed: 18536723 (PDB entries with the same primary citation)
DOI: 10.1038/NSMB.1443
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (2.75 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.264140.4%7.2%5.0%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 2vsn
no rotation
Molmil generated image of 2vsn
rotated about x axis by 90°
Molmil generated image of 2vsn
rotated about y axis by 90°

More Biological unit images

Molmil generated image of 2vsn
no rotation
Molmil generated image of 2vsn
rotated about x axis by 90°
Molmil generated image of 2vsn
rotated about y axis by 90°
(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (2vsn.pdb1.gz [84.56 KB])
Coordinate files for Biological unit (2vsn.pdb2.gz [84.63 KB])