2V3Q

Serendipitous discovery and X-ray structure of a human phosphate binding apolipoprotein

Replaces:  2CAP

Summary for 2V3Q

• Entry DOI: 10.2210/pdb2v3q/pdb
• Descriptor: HUMAN PHOSPHATE BINDING PROTEIN, GLYCEROL, PHOSPHATE ION, ... (5 entities in total)
• Functional Keywords: atherosclerosis, hdl, missing gene, paraoxonase, phosphatemia, transport protein, transporter
• Biological source: HOMO SAPIENS (HUMAN)
• Cellular location: Secreted : P85173
• Total number of polymer chains: 1
• Total formula weight: 39771.22

Authors

Morales, R.,Berna, A.,Carpentier, P.,Elias, M.,Contreras-Martel, C.,Renault, F.,Nicodeme, M.,Chesne-Seck, M.-L.,Bernier, F.,Dupuy, J.,Schaeffer, C.,Diemer, H.,Van Dorsselaer, A.,Fontecilla, J.C.,Masson, P.,Rochu, D.,Chabriere, E. (deposition date: 2007-06-20, release date: 2008-07-22, Last modification date: 2024-10-23)

Primary citation

Diemer, H.,Elias, M.,Renault, F.,Rochu, D.,Contreras-Martel, C.,Schaeffer, C.,Van Dorsselaer, A.,Chabriere, E.
Tandem Use of X-Ray Crystallography and Mass Spectrometry to Obtain Ab Initio the Complete and Exact Amino Acids Sequence of Hpbp, a Human 38kDa Apolipoprotein
Proteins: Struct., Funct., Bioinf., 71:1708-, 2008

PubMed Abstract: The Human Phosphate Binding Protein (HPBP) is a serendipitously discovered apolipoprotein from human plasma that binds phosphate. Amino acid sequence relates HPBP to an intriguing protein family that seems ubiquitous in eukaryotes. These proteins, named DING according to the sequence of their four conserved N-terminal residues, are systematically absent from eukaryotic genome databases. As a consequence, HPBP amino acids sequence had to be first assigned from the electronic density map. Then, an original approach combining X-ray crystallography and mass spectrometry provides the complete and a priori exact sequence of the 38-kDa HPBP. This first complete sequence of a eukaryotic DING protein will be helpful to study HPBP and the entire DING protein family.

PubMed: 18076037
DOI: 10.1002/PROT.21866

Experimental method

X-RAY DIFFRACTION (1.89 Å)