Ensemble refinement of the crystal structure of a lysine decarboxylase-like protein from Arabidopsis thaliana gene At5g11950

Summary for 2Q4D

DescriptorLysine decarboxylase-like protein At5g11950, NITRATE ION, 1,2-ETHANEDIOL, ... (4 entities in total)
Functional Keywordsensemble refinement, refinement methodology development, at5g11950, lysine decarboxylase-like protein, structural genomics, protein structure initiative, psi, center for eukaryotic structural genomics, cesg, unknown function
Biological sourceArabidopsis thaliana (thale cress)
Cellular locationCytoplasm Q84MC2
Total number of polymer chains2
Total molecular weight48788.76
Levin, E.J.,Kondrashov, D.A.,Wesenberg, G.E.,Phillips Jr., G.N.,Center for Eukaryotic Structural Genomics (CESG) (deposition date: 2007-05-31, release date: 2007-06-19, Last modification date: 2011-08-10)
Primary citation
Levin, E.J.,Kondrashov, D.A.,Wesenberg, G.E.,Phillips, G.N.
Ensemble refinement of protein crystal structures: validation and application.
Structure, 15:1040-1052, 2007
PubMed: 17850744 (PDB entries with the same primary citation)
DOI: 10.1016/j.str.2007.06.019
MImport into Mendeley
Experimental method

Structure validation

RfreeRamachandran outliersSidechain outliersRSRZ outliers0.2240.9%2.9%3.1%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 2q4d
no rotation
Molmil generated image of 2q4d
rotated about x axis by 90°
Molmil generated image of 2q4d
rotated about y axis by 90°