2PV0

DNA methyltransferase 3 like protein (DNMT3L)

2PV0 の概要

• エントリーDOI: 10.2210/pdb2pv0/pdb
• 関連するPDBエントリー: 2PVC
• 分子名称: DNA (cytosine-5)-methyltransferase 3-like, ZINC ION (2 entities in total)
• 機能のキーワード: dnmt3l, unmethylated h3k4, de novo dna methylation, transferase regulator
• 由来する生物種: Homo sapiens (human)
• 細胞内の位置: Nucleus (Probable): Q9UJW3
• タンパク質・核酸の鎖数: 3
• 化学式量合計: 131180.62

構造登録者

Cheng, X. (登録日: 2007-05-09, 公開日: 2007-08-14, 最終更新日: 2024-02-21)

主引用文献

Ooi, S.K.,Qiu, C.,Bernstein, E.,Li, K.,Jia, D.,Yang, Z.,Erdjument-Bromage, H.,Tempst, P.,Lin, S.P.,Allis, C.D.,Cheng, X.,Bestor, T.H.
DNMT3L connects unmethylated lysine 4 of histone H3 to de novo methylation of DNA.
Nature, 448:714-717, 2007

PubMed Abstract: Mammals use DNA methylation for the heritable silencing of retrotransposons and imprinted genes and for the inactivation of the X chromosome in females. The establishment of patterns of DNA methylation during gametogenesis depends in part on DNMT3L, an enzymatically inactive regulatory factor that is related in sequence to the DNA methyltransferases DNMT3A and DNMT3B. The main proteins that interact in vivo with the product of an epitope-tagged allele of the endogenous Dnmt3L gene were identified by mass spectrometry as DNMT3A2, DNMT3B and the four core histones. Peptide interaction assays showed that DNMT3L specifically interacts with the extreme amino terminus of histone H3; this interaction was strongly inhibited by methylation at lysine 4 of histone H3 but was insensitive to modifications at other positions. Crystallographic studies of human DNMT3L showed that the protein has a carboxy-terminal methyltransferase-like domain and an N-terminal cysteine-rich domain. Cocrystallization of DNMT3L with the tail of histone H3 revealed that the tail bound to the cysteine-rich domain of DNMT3L, and substitution of key residues in the binding site eliminated the H3 tail-DNMT3L interaction. These data indicate that DNMT3L recognizes histone H3 tails that are unmethylated at lysine 4 and induces de novo DNA methylation by recruitment or activation of DNMT3A2.

PubMed: 17687327
DOI: 10.1038/nature05987

実験手法

X-RAY DIFFRACTION (3.3 Å)