2P5Q

Crystal structure of the poplar glutathione peroxidase 5 in the reduced form

Summary for 2P5Q

Related2P5R
DescriptorGlutathione peroxidase 5, CADMIUM ION, ACETATE ION, ... (4 entities in total)
Functional Keywordsthioredoxin fold, oxidoreductase
Biological sourcePopulus trichocarpa x Populus deltoides
Total number of polymer chains4
Total molecular weight81801.03
Authors
Koh, C.S.,Didierjean, C.,Navrot, N.,Panjikar, S.,Mulliert, G.,Rouhier, N.,Jacquot, J.-P.,Aubry, A.,Shawkataly, O.,Corbier, C. (deposition date: 2007-03-16, release date: 2007-07-24, Last modification date: 2017-10-18)
Primary citation
Koh, C.S.,Didierjean, C.,Navrot, N.,Panjikar, S.,Mulliert, G.,Rouhier, N.,Jacquot, J.P.,Aubry, A.,Shawkataly, O.,Corbier, C.
Crystal Structures of a Poplar Thioredoxin Peroxidase that Exhibits the Structure of Glutathione Peroxidases: Insights into Redox-driven Conformational Changes.
J.Mol.Biol., 370:512-529, 2007
PubMed: 17531267 (PDB entries with the same primary citation)
DOI: 10.1016/j.jmb.2007.04.031
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (2 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.200800.2%0.6%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 2p5q
no rotation
Molmil generated image of 2p5q
rotated about x axis by 90°
Molmil generated image of 2p5q
rotated about y axis by 90°

More Biological unit images

Molmil generated image of 2p5q
no rotation
Molmil generated image of 2p5q
rotated about x axis by 90°
Molmil generated image of 2p5q
rotated about y axis by 90°
(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (2p5q.pdb2.gz [62.05 KB])
Coordinate files for Biological unit (2p5q.pdb1.gz [62.52 KB])