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2KPE

Refined structure of Glycophorin A transmembrane segment dimer in DPC micelles

Summary for 2KPE
Entry DOI10.2210/pdb2kpe/pdb
Related2KPF
DescriptorGlycophorin-A (1 entity in total)
Functional Keywordsglycophorin a, transmembrane dimer, micelles, blood group antigen, cell membrane, glycoprotein, host-virus interaction, membrane, sialic acid, transmembrane, membrane protein
Biological sourceHomo sapiens (human)
Cellular locationCell membrane; Single-pass type I membrane protein: P02724
Total number of polymer chains2
Total formula weight6321.71
Authors
Mineev, K.S.,Bocharov, E.V.,Goncharuk, M.V.,Arseniev, A.S.,Volynsky, P.E.,Efremov, R.G. (deposition date: 2009-10-13, release date: 2010-09-22, Last modification date: 2024-05-01)
Primary citationMineev, K.S.,Bocharov, E.V.,Volynsky, P.E.,Goncharuk, M.V.,Tkach, E.N.,Ermolyuk, Y.S.,Schulga, A.A.,Chupin, V.V.,Maslennikov, I.V.,Efremov, R.G.,Arseniev, A.S.
Dimeric structure of the transmembrane domain of glycophorin a in lipidic and detergent environments.
Acta Naturae, 3:90-98, 2011
Cited by
PubMed Abstract: Specific interactions between transmembrane α-helices, to a large extent, determine the biological function of integral membrane proteins upon normal development and in pathological states of an organism. Various membrane-like media, partially those mimicking the conditions of multicomponent biological membranes, are used to study the structural and thermodynamic features that define the character of oligomerization of transmembrane helical segments. The choice of the composition of the membrane-mimicking medium is conducted in an effort to obtain a biologically relevant conformation of the protein complex and a sample that would be stable enough to allow to perform a series of long-term experiments with its use. In the present work, heteronuclear NMR spectroscopy and molecular dynamics simulations were used to demonstrate that the two most widely used media (detergent DPC micelles and lipid DMPC/DHPC bicelles) enable to perform structural studies of the specific interactions between transmembrane α-helices by the example of dimerizing the transmembrane domain of the bitopic protein glycophorin A. However, a number of peculiarities place lipid bicelles closer to natural lipid bilayers in terms of their physical properties.
PubMed: 22649687
PDB entries with the same primary citation
Experimental method
SOLUTION NMR
Structure validation

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